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Stars
A fork of exonerate: a generic tool for sequence alignment
Capture audio from a microphone on your Raspberry Pi Pico or any RP2040 based board. 🎤
A targeted amplicon sequencing panel to simultaneously identify mosquito species and Plasmodium presence across the entire Anopheles genus
A repository for the schemas used for the Data Repository Service.
A Python-based EGA download client
coadunate / nanoView
Forked from hammerlab/pileup.jsVisualization tool for nanopore data
Simple makefile-based build for musl cross compiler
Fast calculations of linkage-disequilibrium in large-scale human cohorts
dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Ma…
De novo genome assembly and multisample variant calling
BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data
An accurate base caller for Illumina non-patterned sequencing platforms
FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries
A single molecule sequence assembler for genomes large and small.
Graph-based alignment (Hierarchical Graph FM index)
Rapid Mapping-based Isoform Quantification from RNA-Seq Reads
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.