8000 bamCorrelate: gtf as --BED-file input · Issue #71 · deeptools/deepTools · GitHub
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bamCorrelate: gtf as --BED-file input #71

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adomingues opened this issue Jan 28, 2015 · 1 comment
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bamCorrelate: gtf as --BED-file input #71

adomingues opened this issue Jan 28, 2015 · 1 comment
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enhancement
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2.3

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@adomingues
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Is possible to use a GTF file as an argument for the bamCorrelate?

The reason that I am asking, is that frequently gene annotations come in that format. For instance, I am comparing bams form 2 sequencing runs mapped with the same GTF. I would make sense to use that GTF for the comparison of the sequencing runs.

Of course I can easily convert the GTF in bed, but what is the fun in that? :)
@vivekbhr vivekbhr mentioned this issue Jan 11, 2016
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@dpryan79 dpryan79 added this to the 2.3 milestone Mar 6, 2016
@dpryan79 dpryan79 mentioned this issue Mar 9, 2016
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@dpryan79 dpryan79 mentioned this issue Mar 29, 2016
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@dpryan79
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This is now implemented in the develop branch, which will become the 2.3 release.

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