8000 add possibility to use bed12 or gtf to construct metagene heatmap and profile · Issue #76 · deeptools/deepTools · GitHub
[go: up one dir, main page]
More Web Proxy on the site http://driver.im/
Skip to content

add possibility to use bed12 or gtf to construct metagene heatmap and profile #76

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom
Closed
lelouar opened this issue Apr 27, 2015 · 3 comments
Closed

add possibility to use bed12 or gtf to construct metagene heatmap and profile #76

lelouar opened this issue Apr 27, 2015 · 3 comments
Assignees
@fidelram
Labels
enhancement
Milestone
2.3

Comments

@lelouar
Copy link
lelouar commented Apr 27, 2015

add the possibility to join all the exons for construct transcript genebody with RNA-seq data
@fidelram fidelram mentioned this issue May 4, 2015
Closed
@fidelram fidelram self-assigned this May 4, 2015
@fidelram
Copy link
Collaborator

Commit 738a840 initially address the issue by using a custom bed file reader. This is just one step into the solution.

@vivekbhr vivekbhr mentioned this issue Jan 11, 2016
Closed
10 tasks
@dpryan79 dpryan79 mentioned this issue Feb 8, 2016
Closed
@dpryan79 dpryan79 added this to the 2.3 milestone Mar 6, 2016
@dpryan79
Copy link
Collaborator
dpryan79 commented Mar 9, 2016

It turns out that a side-effect of implementing this (I'm working on it and #71 now) will be to largely get rid of bx-python. That'll then make #237 easier :)

@dpryan79 dpryan79 mentioned this issue Mar 29, 2016
Closed
@dpryan79
Copy link
Collaborator

This is now implemented in the develop branch, which will become the 2.3 release.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@fidelram fidelram

Labels
enhancement
Projects
None yet
Milestone
2.3
Development

No branches or pull requests
3 participants
@fidelram @dpryan79 @lelouar
0