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Issues list

generating masks from proseg segmentation
#67 opened Apr 25, 2025 by dpschreiner
1
Error regarding cell_volume in segmentation of Xenium data
#65 opened Apr 21, 2025 by ochiken-A1772
10000
2
Rounding Proseg Expected Counts
#62 opened Mar 28, 2025 by annachernysheva179
1
Specify prior segmentation
#61 opened Mar 28, 2025 by ConstensouxAlexis
2
Xenium: Proseg segmenting huge cells.
#59 opened Mar 17, 2025 by jpsgill-allen
2
Proseg v2 out-of-memory error
#58 opened Mar 17, 2025 by yihming
4
Impact of --schedule parameter on final segmentation results
#57 opened Mar 10, 2025 by PietroAndrei
4
Proseg installation
#56 opened Mar 10, 2025 by hombre111
3
3D polygons or 2D polygons as segmentation
#53 opened Mar 6, 2025 by ruqianl
4
Performance on Intermediate Cell Types
#52 opened Feb 28, 2025 by DarioS
2
downstream analyses: expected counts vs counts
#49 opened Feb 5, 2025 by j-bac
2
Xenium 5K Proseg2 output questions
#46 opened Dec 13, 2024 by nihalasalem
2
Cell Type Fusions
#45 opened Dec 6, 2024 by DarioS
1
missing pixel inside of cell polygons
#40 opened Oct 18, 2024 by Bo-UT
CosMx flat file changes?
#39 opened Oct 8, 2024 by kescobo
2
Import fails with xeniumranger 3
#38 opened Oct 2, 2024 by asmitaL99
1
Imaging Mass Cytometry is Unsupported
#37 opened Sep 20, 2024 by DarioS
3
How does Proseg use information of DAPI/Nuclear
#36 opened Sep 17, 2024 by wuwenrui555
2
Compatibility with squidpy?
#35 opened Sep 17, 2024 by jamesboot
2
Proseg crashes or generates poor segmentation with Xenium 5k, CosMx 6k, etc
#33 opened Sep 8, 2024 by yihming
28
Proseg fails to read any transcripts from some .csv.gz files
#29 opened Jul 26, 2024 by GBeattie
7
Presence of low counts squares
#28 opened Jul 22, 2024 by guigir
1
High fraction of cells empty - alert from xeniumranger after import
#25 op 53D3 ened Jul 10, 2024 by imran-aifi
2
Overflow Problem in CosMx 6000plex
#23 opened Jul 3, 2024 by SanoKyohei
3
Possible performance issue on CosMx data
#20 opened Jun 26, 2024 by yihming
4
ProTip! Exclude everything labeled bug with -label:bug.
0