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proseg Public
Probabilistic cell segmentation for in situ spatial transcriptomics
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prodx Public
Negative binomial regression for single-cell count data
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SpuriousCoexpression.jl Public
Benchmarking tool for spatial transcriptomics segmentation
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ecosystem-packages Public
Forked from scverse/ecosystem-packagesRegistry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
Python BSD 3-Clause "New" or "Revised" License UpdatedJul 3, 2023 -
maxspin Public
Quantifying spatial information in spatial transcriptomics
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Baysor Public
Forked from kharchenkolab/BaysorBayesian Segmentation of Spatial Transcriptomics Data
Julia MIT License UpdatedApr 25, 2023 -
Muon.jl Public
Forked from scverse/Muon.jlMuon for Julia
Julia BSD 3-Clause "New" or "Revised" License UpdatedApr 14, 2023 -
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fastq-tools Public
Small utilities for working with fastq sequence files.
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AnnDatas.jl Public
Julia compatibility for the anndata python module
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quip Public
Compressing next-generation sequencing data with extreme prejudice.
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squidpy Public
Forked from scverse/squidpySpatial Single Cell Analysis in Python
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 30, 2021 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell UpdatedNov 5, 2021 -
TiffImages.jl Public
Forked from tlnagy/TiffImages.jlPure-Julia TIFF I/O with a focus on correctness 🧐
Julia MIT License UpdatedNov 5, 2021 -
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pix2pix Public
Forked from phillipi/pix2pixImage-to-image translation with conditional adversarial nets
Lua Other UpdatedJun 6, 2021 -
seine-rs Public
Forked from COMBINE-lab/seine-rsA (rust)🦀 library and suite of tools for manipulating and processing the output of salmon, alevin, and alevin-fry 🐟
Rust BSD 3-Clause "New" or "Revised" License UpdatedMar 13, 2021 -
gccontent-benchmark Public
Forked from samuell/gccontent-benchmarkBenchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)
Rust MIT License UpdatedFeb 19, 2021 -
GatedLinearNetworks.jl Public
A gaussian gated linear networks implementation
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polee Public
Analyzing RNA-Seq with approximate likelihood
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DecisionTree.jl Public
Forked from JuliaAI/DecisionTree.jlJulia implementation of Decision Tree (CART) and Random Forest algorithms
Julia Other UpdatedSep 29, 2019 -
RSEM Public
Forked from deweylab/RSEMRSEM: accurate quantification of gene and isoform expression from RNA-Seq data
C++ GNU General Public License v3.0 UpdatedApr 7, 2019 -
BioAlignments.jl Public
Forked from BioJulia/BioAlignments.jlSequence alignment tools
Julia MIT License UpdatedApr 4, 2019
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