Tags: dattalab/keypoint-moseq
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Merge pull request #224 from dattalab/dev (Keypoint-MoSeq 0.6.0) - Brand new calibration widget that relies on fewer dependencies and is therefore more stable. - Added functions for manually merging similar syllables after modeling. - Fixed bug where the mice would not be properly aligned in side-view when generating grid movies of 3D keypoints. - More detailed memory requirements in documentation [here](https://keypoint-moseq.readthedocs.io/en/latest/FAQs.html#out-of-memory) - 'pre' and 'post' parameters for syllable visualization functions are now defined in seconds rather than frames. FPS for a dataset is now defined in the config file. - Batch size automatically determined for input data rather than being hard-coded to maximize memory efficiency by minimizing unnecessary zero-padding. - Noise added to data during preprocessing is now deterministic for easier debugging. - Only open a file handle to one video at a time when generating grid movies to avoid max open file handle errors.
Merge pull request #201 from dattalab/refactor-install Edited setup.cfg to match jax-moseq's new installation setup. This unpinned a number of libraries and created a version conflict between dynamax and python 3.9, so the Python requirement was also updated to 3.10. Because jax-moseq's installation is now simpler and jax handles CUDA installation automatically, the conda environment yaml files were removed in favor of using pip install keypoint-moseq. Documentation and tutorials were updated to reflect these changes. Finally, black formatting was applied to all files. 2nd attempt - 1st one contained unrelated changed by accident.
Merge pull request #200 from dattalab/refactor-install Edited setup.cfg to match jax-moseq's new installation setup. This unpinned a number of libraries and created a version conflict between dynamax and python 3.9, so the Python requirement was also updated to 3.10. Because jax-moseq's installation is now simpler and jax handles CUDA installation automatically, the conda environment yaml files were removed in favor of using pip install keypoint-moseq. Documentation and tutorials were updated to reflect these changes. Finally, black formatting was applied to all files.
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