Stars
Minimal snakemake profile for biowulf cluster
Software for ancestry estimation in unrelated individuals
VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
Fast, Accurate and Memory-Efficient Principal Component Analysis For Tera-scale Dataset
VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format
CCB Skills Seminar (Fall 2023) - snakemake
Pipelines for population genomics with low-coverage WGS data.
A simple Snakemake profile for Slurm without --cluster-config
A basic user tool to execute simple docker containers in batch or interactive systems without root privileges.
A snakemake pipeline wrapping MitoZ and getOrganelle for de novo mitogenome assembly using short reads and subsequent QC.
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
This repository contains the code and manual for the R package delimitR.
A snakemake pipeline for the batch assembly, annotation, and phylogenetic analysis of mitochondrial genomes from genome skims
A tutorial on genomic tests for introgression
Tutorial to infer phylogenetic networks from multilocus data with SNaQ in PhyloNetworks