[Test] Adjust index tests to expected behavior #16062
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# Conflicts: # test/sql/upsert/test_big_insert.test
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With #15977, these changes should fix the remaining index-related nightly test failures.
Fix https://github.com/duckdblabs/duckdb-internal/issues/4095.
Fix https://github.com/duckdblabs/duckdb-internal/issues/4093