Stars
Phylogenetic maximum representation sampling: choosing most representative strains or taxa
A pipeline for the analysis of Illumina sequence data from Influenza viruses
Probe set files and pipeline for the analysis of data acquired from the Hutter et al. (2021) sequence capture probe set for all frogs
R package for processing high-throughput sequencing data from targeted sequence capture for phylogenomic analyses
Analysis of convergence between organismal traits and DNA/protein sequences
An ultrafast and memory efficient tool for phylogenomics
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Laboratory protocols used in the Phyletica Lab at Auburn University
elPrep: a high-performance tool for analyzing sequence alignment/map files in sequencing pipelines.
A fully automated gene annotator from RNA-Seq expression data
Tools for fast and flexible genome assembly scaffolding and improvement
A program for divvying or partially filtering multiple sequence alignments