8000 update self hosted runner to use new setup by mikemhenry · Pull Request #670 · choderalab/openmmtools · GitHub
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update self hosted runner to use new setup #670

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Merged
merged 4 commits into from
Jun 14, 2023
Merged

update self hosted runner to use new setup #670

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5b705f4
update self hosted runner to use new setup
mikemhenry Mar 25, 2023
1bba3f1
switch to using pytest on gpu
mikemhenry Mar 27, 2023
d7bbae6
Merge branch 'main' into fix/self-hosted-runner-update
mikemhenry Jun 13, 2023
243f652
Add token + don't fail if upload fails
mikemhenry Jun 13, 2023
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20 changes: 11 additions & 9 deletions .github/workflows/self-hosted-gpu-test.yml
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89C1
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ on:
jobs:
start-runner:
name: Start self-hosted EC2 runner
runs-on: ubuntu-20.04
runs-on: ubuntu-latest
outputs:
label: ${{ steps.start-ec2-runner.outputs.label }}
ec2-instance-id: ${{ steps.start-ec2-runner.outputs.ec2-instance-id }}
Expand All @@ -28,10 +28,10 @@ jobs:
with:
mode: start
github-token: ${{ secrets.GH_PERSONAL_ACCESS_TOKEN }}
ec2-image-id: ami-096d499d418f88d88
ec2-instance-type: p2.xlarge
subnet-id: subnet-0e82552b8c708a999
security-group-id: sg-0589e74ec03965add
ec2-image-id: ami-04d16a12bbc76ff0b
ec2-instance-type: g4dn.xlarge
subnet-id: subnet-0dee8543e12afe0cd # us-east-1a
security-group-id: sg-0f9809618550edb98
# iam-role-name: self-hosted-runner # optional, requires additional permissions
aws-resource-tags: > # optional, requires additional permissions
[
Expand All @@ -46,6 +46,8 @@ jobs:
TEST_MODE: GPU
OPENMM: ${{ matrix.cfg.openmm }}
OE_LICENSE: ${{ github.workspace }}/oe_license.txt
HOME: /home/ec2-user
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

defaults:
run:
Expand All @@ -55,7 +57,7 @@ jobs:
- uses: conda-incubator/setup-miniconda@v2
with:
installer-url: https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-x86_64.sh
python-version: 3.8
python-version: "3.10"
activate-environment: test
channels: conda-forge,defaults
environment-file: devtools/conda-envs/test_env.yaml
Expand All @@ -66,7 +68,7 @@ jobs:
- name: Refine test env
shell: bash -l {0}
run: |
mamba install -y cudatoolkit==11.0.3 openmm==7.7
mamba install -y cudatoolkit==11.7 openmm>=8.0

- name: Additional info about the build
shell: bash -l {0}
Expand All @@ -93,7 +95,7 @@ jobs:
- name: Test the package
shell: bash -l {0}
run: |
nosetests openmmtools/tests --nocapture --verbosity=2 --with-timer --with-doctest
pytest -v --cov-report xml --durations=0 --cov=openmmtools openmmtools/tests

- name: Codecov
if: ${{ github.repository == 'choderalab/openmmtools'
Expand All @@ -103,7 +105,7 @@ jobs:
file: ./coverage.xml
name: codecov-${{ matrix.cfg.os }}-py${{ matrix.cfg.python-version }}
flags: unittests
fail_ci_if_error: true
fail_ci_if_error: false

stop-runner:
name: Stop self-hosted EC2 runner
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