Stars
SplitFusion is a clinical-grade fusion detection algorithm with high research potentials.
A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations
cetienn01 / Gattaca
Forked from rschenck/GattacaBase Pair Resolution Mutation Tracking
Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.
QC analysis for lung cancer project with MGH
A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression analysis using DESeq2, using example data from Guo et al. 2019.
Code for "Learning Graph Cellular Automata" (NeurIPS 2021).
Open source code for AlphaFold 2.
Python best practices guidebook, written for humans.
Python Implementation of Reinforcement Learning: An Introduction
Open Deep Learning and Reinforcement Learning lectures from top Universities like Stanford, MIT, UC Berkeley.
Curated list of project-based tutorials
F´ - A flight software and embedded systems framework
Freeze (package) Python programs into stand-alone executables
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
Therapeutics Commons (TDC): Multimodal Foundation for Therapeutic Science
PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.
Public gallery of NIBR Open Source projects
A bash script for parallel batch alignment using STAR
Aggregate results from bioinformatics analyses across many samples into a single report.
Nextflow tutorial for the BADAS series at NYU Center for Genomics and Systems Biology
Adapted from the GATK best practice guide to preprocess whole exome sequencing (WES) data