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Starred repositories

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MATLAB 8 3 Updated Jan 26, 2022

Composite vein imaging for susceptibility-based magnetic resonance imaging.

MATLAB 5 Updated Nov 14, 2017

CNN-based segmentation tool for segmenting PVS on T1 and WMH on FLAIR MRI

7 Updated Mar 28, 2025

Matlab GUI pipeline application for quantitative susceptibility mapping (QSM)

MATLAB 62 13 Updated Jul 4, 2025

Maximum Spherical Mean Value for Shadow Reduction

MATLAB 2 Updated Jul 3, 2025

4D Flow MRI data analysis in napari

Python 1 Updated Dec 1, 2023
Python 3 2 Updated Jun 7, 2025
Python 3 Updated Jul 1, 2025
Python 23 2 Updated Jun 23, 2025

The Medical Imaging Interaction Toolkit.

C++ 756 347 Updated Jul 4, 2025

Run ICA-AROMA on fMRIPrep derivatives

Python 15 3 Updated Jul 1, 2025

Group ICA/IVA software (MATLAB)

MATLAB 84 45 Updated Jul 2, 2025

automatically classify ICA components

Python 3 Updated Jan 28, 2021

A TractSeg pipeline compatible with PyDesigner outputs

Jupyter Notebook 6 Updated Aug 28, 2020

Multi-atlas propagation with enhanced registration

Shell 7 3 Updated Apr 25, 2025

Software for automated multiverse analysis for fMRI

Python 2 2 Updated May 8, 2025

Automated processing of single echo (SE), multi-echo (ME) fMRI, ASLBOLD and VBM in SPM12.

MATLAB 1 Updated Jun 20, 2025

Deep learning translations between representations of functional connectivity in the brain

Jupyter Notebook 2 Updated Jun 5, 2025

R package BayesBrainMap implementing Bayesian brain mapping for individual functional topography and connectivity

R 1 1 Updated Jun 28, 2025

Functional MRI task analysis and resting-state connectivity in Python

Jupyter Notebook 1 Updated May 30, 2025

Small project to pre-process MRI diffusion data using MRTrix software and run TractSeg software to get white matter bundle.

Python 2 Updated Dec 11, 2024

DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medi…

Python 766 447 Updated Jul 4, 2025

ASL pipeline for the Human Connectome Project

Python 11 5 Updated Apr 9, 2025

Arterial Spin Labeling Pipeline for the Human Connectome Project

1 Updated Jun 19, 2025

About BrainTGL BrainTGL (Temporal Graph Learning for Brain Networks) is a deep learning framework designed for analyzing brain networks using resting-state functional MRI (rs-fMRI) data. It provide…

Python 6 1 Updated Aug 18, 2024

Classifying resting state fMRI brain networks using deep learning. The dataset was processed using group-ICA and dual regression.

Python 6 1 Updated Mar 14, 2024

NPJ Digital Medicine 2023: Deep-learning-enabled brain hemodynamic mapping using resting-state fMRI

Python 5 Updated Jun 29, 2023

A TTS model capable of generating ultra-realistic dialogue in one pass.

Python 17,342 1,428 Updated Jun 28, 2025
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