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gc_16S Public
16S analysis for "Rare terrestrial microbe genomes enabled by DNA-based GC-fractionation"
HTML UpdatedMay 6, 2025 -
phyloniche Public
Some tools for calculating niche specificity using phyloseq objects.
R UpdatedMar 24, 2025 -
phyloseq.mate Public
Various helper functions for working with phyloseq.
R GNU General Public License v3.0 UpdatedJun 16, 2024 -
BASTA Public
Forked from timkahlke/BASTABasic Sequence Taxonomy Annotator
Python GNU General Public License v3.0 UpdatedMay 13, 2024 -
zotero-android Public
Forked from zotero/zotero-androidZotero for Android
Kotlin Other UpdatedMay 1, 2024 -
dadasnake Public
Forked from a-h-b/dadasnakeAmplicon sequencing workflow heavily using DADA2 and implemented in snakemake
Python GNU General Public License v3.0 UpdatedFeb 13, 2023 -
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aberdown Public
Forked from ismayc/thesisdownAn updated R Markdown thesis template using the bookdown package
TeX Other UpdatedJan 25, 2023 -
TrimGalore Public
Forked from FelixKrueger/TrimGaloreA wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
Perl GNU General Public License v3.0 UpdatedApr 29, 2022 -
Tome Public
Forked from EngqvistLab/TomeA machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
Python GNU General Public License v3.0 UpdatedDec 20, 2021 -
posterdown Public
Forked from brentthorne/posterdownUse RMarkdown to generate PDF Conference Posters via HTML
HTML Other UpdatedDec 15, 2021 -
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Linking-16S-to-amoA-taxonomy Public
Forked from alex-bagnoud/Linking-16S-to-amoA-taxonomyShell UpdatedSep 27, 2021 -
entrez_qiime Public
Forked from bakerccm/entrez_qiimeA utility to generate input files for taxonomy assignment in QIIME from the NCBI database
Python GNU General Public License v3.0 UpdatedApr 24, 2020 -
amoA_MiSeq_sequencing Public
Forked from AigleAxel/amoA_MiSeq_sequencingExisting tools based ‘assembly pipeline’ and ‘gap pipeline’ for paired-end MiSeq Illumina reads
Shell UpdatedJun 26, 2019 -
github-repository-template Public
Forked from wbnns/github-repository-templateTemplate for setting up a new GitHub repository
The Unlicense UpdatedJun 1, 2019 -
aiyprojects-raspbian Public
Forked from google/aiyprojects-raspbianSource code for the AIYProjects "Voice Kit"
Python Apache License 2.0 UpdatedSep 23, 2017 -
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metAMOS Public
Forked from marbl/metAMOSA metagenomic and isolate assembly and analysis pipeline built with AMOS
SQL Other UpdatedSep 4, 2014
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