Stars
A versatile python framework for tomographic imaging
A beautiful, simple, clean, and responsive Jekyll theme for academics
Brian is a free, open source simulator for spiking neural networks.
[ICLR'24] GTA: A Geometry-Aware Attention Mechanism for Multi-view Transformers
A PyTorch library for implementing flow matching algorithms, featuring continuous and discrete flow matching implementations. It includes practical examples for both text and image modalities.
Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset
Automatic atomic model building program for cryo-EM maps
Basic cryo-EM reconstruction functionality in JAX.
Numerical experiments showing artifacts resulting from dimensionality reduction.
The Inaugural Flatiron Institute Cryo-EM Heterogeneity Community Challenge
Cookiecutter for napari plugins
Scripts to simulation of Tomograms with the TEM Simulator easy.
cryo-ET particle picking by representation and metric learning
GPU-accelerated template matching for cryo-ET
Scripts to make cryo-electron tomography a bit easier
Implementation of Denoising Diffusion Probabilistic Model in Pytorch
Implementation of Alphafold 3 from Google Deepmind in Pytorch
Official PyTorch Implementation of "Scalable Diffusion Models with Transformers"
Live processing and real time reconstruction of cryo
Self-supervised learning for isotropic cryoET reconstruction
ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.
An algorithm for computing the Fourier shell correlation from a single measurement
Understanding Deep Learning - Simon J.D. Prince
A launch point for your personal nvim configuration
This is a repo with links to everything you'd ever want to learn about data engineering
Leveraging Structural Priors and Constraints for Cryo-EM Heterogeneous Reconstruction