Stars
Overview of our data for microbial genomic benchmarking
geNomad: Identification of mobile genetic elements
PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.
LexicMap: efficient sequence alignment against millions of prokaryotic genomes
Convert NCBI assembly_summary files into sourmash taxonomy databases.
A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hie…
A collection of exercises for practicing what is taught in Tobira: Gateway to Advanced Japanese.
PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
MetagenOmic read Re-Assigner and abundance quantifier
Aligns short reads using dynamic seed size with strobemers
SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.
flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.