Starred repositories
Designing antimicrobial peptides (AMPs) is awesome.
Package to Draw NLR Domain Architecture using NLRtracker Output
Homomer symmetry prediction from protein sequence
Improving RNA structure prediction through multitask learning on diverse crowdsourced data.
A GPT-4 AI Tutor Prompt for customizable personalized learning experiences.
A Shiny App for Interactive RNAseq Analysis and Visualization
A genome visualization python package for comparative genomics
PartitionFinder discovers optimal partitioning schemes for DNA sequences.
Zotero Add-on Market | Zotero插件市场 | Browsing, installing, and reviewing plugins within Zotero
Open source code for AlphaFold 2.
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
Protein structure comparison tools such as SSAP and SNAP
Tools for fast and flexible genome assembly scaffolding and improvement
GenomeWarp translates genetic variants from one genome assembly version to another.
Algorithm For Gene Order Reconstruction in Ancestors
biogeeker / qvina
Forked from QVina/qvinaAccurately speed up AutoDock Vina
Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO
Reconstruct Ancestral State in Phylogenies
Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
128 Phytophthora Isolates Reveal Species-Specific Microsatellite Distribution
biogeeker / DupGen_finder
Forked from qiao-xin/DupGen_finderA pipeline used to identify different modes of duplicated gene pairs
A pipeline used to identify different modes of duplicated gene pairs