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bulkrnaseq_deseq2 Public
Generalized script for DESeq2 analysis of gene counts matrix from nf-core/rnaseq pipeline
1 UpdatedMay 7, 2024 -
microscopy Public
Repo for code related to handling microscopy imaging files (CZI, OME-TIFF)
Python MIT License UpdatedApr 24, 2024 -
code_snippets Public
Repo for small bits of functional code. Mostly for personal reference or for things I need to use frequently/don't want to forget.
Shell GNU General Public License v3.0 UpdatedMar 3, 2024 -
Nebulosa Public
Forked from powellgenomicslab/NebulosaR package to visualize gene expression data based on weighted kernel density estimation
R UpdatedFeb 27, 2024 -
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rna_velocity_basic Public
Basic RNA velocity analysis using velocyto (spliced/unspliced counts), Seurat (to get UMAP coords and other metadata), and scVelo (RNA velocity analysis and figures)
Python UpdatedJan 12, 2024 -
DoubletFinder Public
Forked from chris-mcginnis-ucsf/DoubletFinderR package for detecting doublets in single-cell RNA sequencing data
R UpdatedNov 29, 2023 -
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