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Intuitive, easy CLIs based on python type hints.

Python 671 15 Updated Jul 1, 2025

CLI interfaces & config objects, from types

Python 675 33 Updated Jul 2, 2025

sync any directory with any device on your local network

Python 150 4 Updated Jun 27, 2025

BWT construction and search

C 116 5 Updated Mar 4, 2025

Follow up to Grace Blackwell's 661k dataset, for 2023

Python 106 11 Updated Jun 23, 2025

Bindings to liblzma in Rust (xz streams in Rust)

Rust 24 6 Updated Jun 18, 2025
Nextflow 2 Updated Jun 26, 2025

Fast sequence distance estimates

Rust 12 4 Updated Jul 2, 2025

Pairwise whole genome aligner

C 172 9 Updated Jun 11, 2025

"My sequences please" - a paired fastq grepper

Rust 4 Updated Apr 21, 2025

Phylogenetic compression of extremely large genome collections [661k β†˜πŸ­πŸ²π—šπ—Άπ—• | BIGSIdata β†˜πŸ°πŸ΄π—šπ—Άπ—• | AllTheBact'23 β†˜πŸ³πŸ±π—šπ—Άπ—•]

Python 37 3 Updated Apr 1, 2025

Read, validate and manipulate CHANGELOG.md files that follow keepachangelog.com specification

Go 48 9 Updated Nov 11, 2021

How many distinct k-mers are there in a sequence?

Rust 11 1 Updated Jun 17, 2025

Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.

Rust 17 2 Updated Jun 18, 2025

A fast static site generator in a single binary with everything built-in. https://www.getzola.org

Rust 15,497 1,054 Updated Jul 2, 2025

A command line utilty for working with BINSEQ files

Rust 20 1 Updated Jul 1, 2025

A high efficiency binary format for sequencing data

Rust 59 5 Updated Jul 1, 2025

A declarative, πŸ»β€β„οΈ-native data frame validation library.

Python 349 10 Updated Jul 2, 2025

A data modelling layer built on top of polars and pydantic

Python 493 25 Updated Jun 28, 2025

Provide an RSS integration for listmonk, a self-hosted newsletter and mailing list manager

Python 22 3 Updated Jun 24, 2025

Improved version of the Oxford Bioinformatics paper template

TeX 14 2 Updated Sep 7, 2024

Unlock your displays on your Mac! Flexible HiDPI scaling, XDR/HDR extra brightness, virtual screens, DDC control, extra dimming, PIP/streaming, EDID override and lots more!

25,468 441 Updated Jun 30, 2025

Aranet4, Aranet2 and Aranet Radiation Python client

Python 247 22 Updated Feb 4, 2025

De novo assembler for single molecule sequencing reads using repeat graphs

C 848 171 Updated May 2, 2025
HTML 3 6 Updated Jun 26, 2025
HTML 1 Updated Jun 27, 2025

BonoboFlow is a nextflow pipeline for viral genome assembly

Nextflow 4 2 Updated May 15, 2025

🐦 Bringing animated parrots to terminals everywhere

JavaScript 4,184 188 Updated May 10, 2025

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

C++ 225 34 Updated Dec 29, 2023

An Ephemeral Markdown Paper for today. Less but handy features for plain Markdown lovers.

TypeScript 382 9 Updated Jul 2, 2025
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