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Geoff Barton's Computational Biology Group

Codes from Geoff Barton's group and the Data Analysis Group (DAG) headed by Dr James Abbott.

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  1. Proteus Proteus Public

    R package for analysing proteomics data

    R 49 3

  2. RATS RATS Public

    Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.

    R 32 1

  3. 2passtools 2passtools Public

    Two pass alignment for long reads

    Python 21 1

  4. AlmostSignificant AlmostSignificant Public

    A server for maintaining high-throughput sequencing QC data

    Python 13

  5. LBS-comparison LBS-comparison Public

    This is a GitHub Repository containing the data and code used for a thorough comparison of 11 ligand binding site prediction tools

    Jupyter Notebook 13 2

  6. profDGE48 profDGE48 Public

    Code base for profiling highly replicated differential gene expression RNA-seq.

    Perl 11 6

Repositories

Showing 10 of 76 repositories
  • fenr Public

    Fast functional enrichment.

    bartongroup/fenr’s past year of commit activity
    R 0 0 0 0 Updated Feb 20, 2025
  • MG_Methyl28S Public

    28S methylation in disease in Drosophila (McGurk)

    bartongroup/MG_Methyl28S’s past year of commit activity
    HTML 0 0 0 0 Updated Jan 28, 2025
  • RNAit Public

    Reimplementation of RNAit RNAi primer selection tool

    bartongroup/RNAit’s past year of commit activity
    HTML 0 MIT 2 0 0 Updated Jan 27, 2025
  • MG_yeast_Tfe Public

    Tfe1 and Tfe2 toxin expression in S. cerevisiae RNA-seq (Katharina Trunk)

    bartongroup/MG_yeast_Tfe’s past year of commit activity
    R 0 0 0 0 Updated Jan 21, 2025
  • MG_NCCProt Public

    Nascent Chromatin Capture Proteomics (Alabert)

    bartongroup/MG_NCCProt’s past year of commit activity
    R 0 0 0 0 Updated Jan 14, 2025
  • dexdash Public

    Interactive explorer for differential expression analysis centred on the volcano plot. Features fast functional enrichment.

    bartongroup/dexdash’s past year of commit activity
    R 2 0 0 0 Updated Jan 14, 2025
  • PT_interogate_m6anet_results Public

    Determine exon location of predicted m6a methylation sites

    bartongroup/PT_interogate_m6anet_results’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 9, 2025
  • LIGYSIS-web Public
    bartongroup/LIGYSIS-web’s past year of commit activity
    Roff 2 MIT 0 0 1 Updated Jan 7, 2025
  • slivka Public
    bartongroup/slivka’s past year of commit activity
    Python 7 Apache-2.0 3 20 (1 issue needs help) 0 Updated Dec 11, 2024
  • SM_dundee-resource-templates Public

    This project serves as a template for building web-based bioinformatics tools.

    bartongroup/SM_dundee-resource-templates’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Dec 4, 2024
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