Stars
Multiple Fill, Color and Other Scales in `ggplot2`
A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data
Package to plot phylogenies with custom shapes
A tool for generating consensus long-read assemblies for bacterial genomes
PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
Multiple Protein Structure Alignment at Scale with FoldMason
A tool for removing redundant genomes from a set of assemblies
Slices/subsections genbank files by either gene names, locus tags or base pair range. Handles multi-genbank files
De novo assembler for single molecule sequencing reads using repeat graphs
✂️ ⚡ Rapid haploid variant calling and core genome alignment
A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
Order and orientation of complete bacterial genomes
A versatile pairwise aligner for genomic and spliced nucleotide sequences
The second version of the Kraken taxonomic sequence classification system
Unaffiliated fork off https://linksawakeningdxhd.itch.io/links-awakening-dx-hd
CarveMe: genome-scale metabolic model reconstruction
Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
Analyzing and visualizing KEGG information using the grammar of graphics
MMseqs2: ultra fast and sensitive search and clustering suite