Lists (7)
Stars
A JBrowse 2 graph genome viewer (WIP)
Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
Mumemto: multi-MUM and MEM finding across pangenomes
Universal and efficient core gene phylogeny with Foldseek and ProstT5
High accuracy RAG for answering questions from scientific documents with citations
Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.
Automated flagging of common spatial and temporal errors in biological and palaeontological collection data, for the use in conservation, ecology and palaeontology.
Post-verkko graph and assembly curation in Python.
TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming
A pipeline for genomic variant detection with genome assemblies at population scale
generating hardware accelerators for pangenomic graph queries
A shiny app for haplotype analysis in a diverse population of sweet corn
An R package to infer and analyze synteny networks from protein sequences
A bioinformatics tool written in Rust to find palindromic sequences in DNA
PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.
2D vector & raster editor that melds traditional layers & tools with a modern node-based, non-destructive, procedural workflow.
Extract Structural Variation signals in Long Reads BAM.
A 'ggplot2' extension that focusses on expanding the plotter's arsenal of guides, such as axes, legends and colour bars. It brings various improvements to existing guides by re-implementation, as w…
🧬High-performance genetics- and genomics-related data visualization using Makie.jl
Efficient indexing and querying of annotations in a pangenome graph