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coverage_plots Public
Scripts to plot coverage across entire genome or around loci of interest
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random_snippets Public
This repository stores random snippets that might be useful again in the future.
UpdatedJun 20, 2024 -
pubMLST_scheme_scraper Public
rest.pubmlst.org webpage scraper. Download and list available schemes and profiles from PubMLST API, and find their last modification date using command line.
R MIT License UpdatedMay 22, 2024 -
enterobase_scheme_scraper Public
Enterobase scheme scraper. Download and list available schemes from Enterobase, and find their last modification date and time.
R MIT License UpdatedMay 4, 2024 -
cgMLSTorg_scheme_scraper Public
cgMLST.org webpage scraper. Download and list available schemes from cgMLST.org, and find their versions and last modification date and time.
R MIT License UpdatedMar 12, 2024 -
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mtDNA_nomenclutter Public
This repository includes scripts and data necessary to reproduce analyses and figures from the study "mtDNA “Nomenclutter” and its Consequences on the Interpretation of Genetic Data".
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AvsX_admixture Public
Repository that stores scripts that are check correlation between autosomal Q files and X-chr Q files and outputs sorted table with best pair of files at the top. It works with ADMIXTURE and fastST…
R UpdatedMay 23, 2023 -
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ind_pres_peer_reviews Public
R script to create personalized html (or pdf) files with a summary from Google Forms. Google Forms was used to gather presentations peer-review for each presenter in multiple groups of students.
R UpdatedNov 24, 2022 -
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