Lists (2)
Stars
Template for Julia Programming Language packages using the copier engine.
AUCell: score single cells with gene regulatory networks
TUI library in Rust with a custom templating language and runtime
A lightweight TUI application to view and query tabular data files, such as CSV, TSV, and parquet.
characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities
Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data
A curated collection of Nextflow implementation patterns
This repository provides a set of Python functions to simplify working with gnomAD Hail Tables. It includes tools for data access, filtering, and analysis.
End-to-end design of 100s of genetic parts in a single experiment
A motley crew of agents developed by the Monarch Initiative
ggret: Visualisation of tree-based phylogenetic networks
An open source graphics editor for 2025: comprehensive 2D content creation tool for graphic design, digital art, and interactive real-time motion graphics — featuring node-based procedural editing
Neon: Serverless Postgres. We separated storage and compute to offer autoscaling, code-like database branching, and scale to zero.
A nextflow pipeline to perform state-of-the-art genome-wide association studies.
R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
A cross-platform, reimplementation of Notepad++
Repository for "NucleoBench: A Large-Scale Benchmark of Neural Nucleic Acid Design Algorithms"
A Nextflow pipeline for genome and pan-genome annotation
🔍 Methylation Pattern-based, Reference-free Inference of Subclonal Makeup. (Lee et al., Bioinformatics. 2019)
A curated list of awesome tools that work within the nu language ecosystem e.g. nushell, scripts, nana, etc.
(Not Offical) BBMap short read aligner, and other bioinformatic tools.
A list of SaaS, PaaS and IaaS offerings that have free tiers of interest to devops and infradev
styx-api / ANTs
Forked from ANTsX/ANTsAdvanced Normalization Tools (ANTs)
Software for predicting library complexity and genome coverage in high-throughput sequencing.