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NGS-pipe: next-generation sequencing pipelines for precision oncology

Python 111 52 Updated Feb 19, 2019

Code and slides for RStudio webinars

HTML 1,534 1,411 Updated Feb 5, 2021

Model Agnostics breakDown plots

R 103 16 Updated Mar 12, 2024

anor: an annotation and visualization system based on R and Shiny framework

R 33 14 Updated Apr 20, 2020

Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.

Java 11 3 Updated Sep 26, 2017

A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).

Python 92 31 Updated Dec 16, 2023

R Deep Learning Cookbook, published by Packt

R 30 35 Updated Jan 30, 2023

⚠️ Old repository for website of STAT 545 @ University of British Columbia

HTML 319 368 Updated Sep 17, 2019

Various teaching material

HTML 182 80 Updated Mar 29, 2025

Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.

Python 18,358 2,422 Updated May 16, 2025

High-precision indoor positioning framework for most wifi-enabled devices.

Go 5,072 369 Updated Sep 7, 2022

Minimal Ubuntu container with STAR aligner

Shell 2 Updated Oct 18, 2017

Rmd source files for the HarvardX series PH525x

R 2,068 1,953 Updated Feb 12, 2024

Useful bash one-liners for bioinformatics.

1,928 522 Updated Sep 9, 2023

A curated list of awesome Bioinformatics libraries and software.

3,518 641 Updated Mar 21, 2025

Markdown bioinformatics training materials for PoreCamp

9 2 Updated Jan 18, 2016

Galaxy RNA workbench

HTML 40 35 Updated Oct 10, 2020

Tutorials for DataCamp (www.datacamp.com)

Jupyter Notebook 981 828 Updated Mar 10, 2019

R package using OBM api. Get data, forms list ...

R 1 Updated Jul 8, 2024

A collective list of free APIs

Python 354,802 37,208 Updated May 20, 2025

R6 based http client for R (for developers)

R 106 18 Updated Jul 4, 2025

An AWS CloudFormation stack to run a serverless password-protected photo gallery

JavaScript 226 60 Updated Apr 23, 2024

Bash based AWS read-only client to make the AWS Console less necessary

Shell 96 17 Updated Jun 6, 2024

Building an image classifier using keras

Jupyter Notebook 164 105 Updated Aug 16, 2022

Image completion using deep convolutional generative adversarial nets in tensorflow

Jupyter Notebook 177 51 Updated Dec 21, 2017

TensorFlow for R

R 1,336 322 Updated Apr 10, 2025

A guide to some of the most useful R Packages that we know about

R 665 218 Updated Sep 16, 2019

Shiny apps for NGS etc based on reusable components created using Shiny modules

HTML 86 28 Updated May 2, 2025

🤹 Shiny tips & tricks for improving your apps and solving common problems

R 1,207 385 Updated Aug 18, 2024

R package for hierarchical models in ecological research

R 1 Updated Jan 31, 2012
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