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Whale.jl Public
Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation
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AdaptiveProposals Public
Adaptive MH proposal kernels
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Sewall Public
Forward population genetics simulation and numerical approximations for multilocus mainland-island and finite-island models
Julia GNU General Public License v3.0 UpdatedSep 10, 2024 -
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NewickTree.jl Public
Newick formatted (phylogenetic) trees
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wgd Public
Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche-psb/wgd.
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vuilbak.github.io Public
Forked from vuilbak/vuilbak.github.iovuilbak website
HTML UpdatedOct 8, 2023 -
morph-bulk Public
Utilities and CLI for MORPH bulk runs
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PlotThemes.jl Public
Forked from JuliaPlots/PlotThemes.jlThemes for the Julia plotting package Plots.jl
Julia Other UpdatedDec 2, 2022 -
DeterministicMixedPloidy Public
Deterministic mixed-ploidy dynamical system
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DeadBird.jl Public
Statistical analysis of comparative genomic data using phylogenetic birth-death process models
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SmoothTree.jl Public
Bayesian estimation of conditional clade distributions etc.
phylogenetics bayesian-inference trees distributions species-tree-estimation multispecies-coalescentJulia UpdatedOct 2, 2022 -
whaleprep Public
Nextflow pipeline for preparatory analyses for Whale
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MaereModel Public
Approximate Bayesian inference for the genome evolution model of Maere et al. (2005)
Julia UpdatedJun 18, 2022 -
TwoTypeDLModel Public
Inference for a two type continuous-time branching process model of gene family evolution
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MSCSimPlot Public
Simulate a multispecies coalescent forward in time and make a plot
Julia UpdatedMar 20, 2022 -
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vimwiki_markdown Public
Forked from WnP/vimwiki_markdownvimwiki markdown file to html with syntax highlighting.
CSS MIT License UpdatedNov 10, 2021 -
revbayes Public
Forked from revbayes/revbayesBayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language
C++ GNU General Public License v3.0 UpdatedNov 9, 2021 -
BayesianHClust Public
Bayesian hierarchical clustering (~Heller & Ghahramani)
Julia UpdatedOct 6, 2021 -
homologizer Public
Forked from wf8/homologizerHomologizer: phasing gene copies into polyploid subgenomes
R UpdatedAug 14, 2021 -
BioAlignments.jl Public
Forked from BioJulia/BioAlignments.jlSequence alignment tools
Julia MIT License UpdatedJul 22, 2021 -
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pandoc-templates-1 Public
Forked from kjhealy/pandoc-templatesSome templates for Pandoc.
TeX UpdatedMar 26, 2021 -
AdvancedMH.jl Public
Forked from TuringLang/AdvancedMH.jlA Julia library for random-walk Metropolis-Hastings algorithms
Julia MIT License UpdatedFeb 10, 2021
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