Extracts regions from a BAM file and exports in SAM format
Please get the latest binary version at https://sourceforge.net/projects/bamextract/
USAGE:
java -jar bamextract.jar options...
=== GENERAL options ===
-i PATH : Path to the input file (BAM format) [REQUIRED]
-r STRING : Regions in format start-end,start2-end2 [REQUIRED]
=== EXAMPLE ===
java -jar bamextract.jar -i reads.bam -r 320-600,1220-4000