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Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecular and Cellular Bioengineering (CMCB) / University of Techn…

Jupyter Notebook 212 49 Updated Sep 11, 2023

3D shape analysis using deep learning

Python 24 6 Updated Oct 19, 2023

[Nature Communications] O2VAE: a model for orientation-invariant representation learning (phenotyping) in cell biology data

Python 32 3 Updated Mar 26, 2025

Python tool to parse Tomocube TCF files to OME-TIFF format

Python 1 Updated Apr 10, 2025

2D soma detection and extraction method based on directional anisotropic gaussian filters and fast marching method.

MATLAB 10 3 Updated Apr 8, 2019
Jupyter Notebook 4 2 Updated Feb 10, 2016

AI-based tool for semantic segmentation of neuronal somas

Python 1 Updated May 17, 2023
Python 2 Updated Apr 8, 2019
449B

Spatial Single Cell Analysis in Python

Python 489 96 Updated May 25, 2025

A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.

147 26 Updated Mar 9, 2025

A curated list of softwares, tools, pipelines, plugins etc. for image analysis related to biological questions.

3 1 Updated Mar 14, 2025
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