8000 GitHub - andreavolpato/rotational_diffusion_photophysics: Tools for computing time-dependent fluorescence signals with rotational diffusion and complex photophysics.
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Tools for computing time-dependent fluorescence signals with rotational diffusion and complex photophysics.

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GPL-3.0 license
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andreavolpato/rotational_diffusion_photophysics

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rotational_diffusion_photophysics

Tools for computing time-dependent fluorescence signals with rotational diffusion and complex photophysics.
An arbitrary kinetic scheme can be used and the program analytically solves the diffusion-kinetics problem. All the angular probability distribution functions are expanded with spherical harmonics.

Content

  • rotational_diffusion_photophysics.py
    Main engine of the kinetics and diffusion solver 5ADD for an arbitrary kinetics scheme and isotorpic free rotatioal diffusion.

  • rotational_diffusion_photophysics_models.py
    Modeling of STARSS experiments using rsEGFP2 protein.

  • plot folder
    Some useful plotting tools for orientational probabilities and STARSS pulse schemes.

  • starss folder
    Notebooks with computation and plotting of example STARSS simulations.

  • notes folder
    Mathematical notes about the rotational diffusion and kinetics model.

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Tools for computing time-dependent fluorescence signals with rotational diffusion and complex photophysics.

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License

GPL-3.0 license
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v1.0.0 Latest
Aug 19, 2022

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