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This repository showcases various advanced techniques for Retrieval-Augmented Generation (RAG) systems. RAG systems combine information retrieval with generative models to provide accurate and cont…

Jupyter Notebook 17,621 1,748 Updated Jun 13, 2025

GWAS Summary Statistics Data Harmonisation

Python 23 16 Updated Jan 13, 2025

Foldseek enables fast and sensitive comparisons of large structure sets.

C 989 126 Updated Jun 13, 2025

A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more

Python 19 5 Updated May 26, 2024

Repository of Jupyter notebook tutorials for teaching the Deep Learning Course at the University of Amsterdam (MSc AI), Fall 2023

Jupyter Notebook 2,878 629 Updated Mar 16, 2025

An awesome repository of community-curated applications of ChatGPT and other LLMs im computational biology

261 25 Updated Apr 16, 2024

A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.

Python 195 11 Updated May 21, 2025

Oxbow makes genomic data ready for high-performance analytics.

Rust 79 8 Updated Jun 13, 2025
Python 278 51 Updated Jun 13, 2025

Customizable React loading spinner that looks like an atom

TypeScript 6 Updated Jun 2, 2025

Grammar of Scalable Linked Interactive Nucleotide Graphics

TypeScript 177 30 Updated Apr 30, 2025

Cellenium is a FAIR and scalable interactive visual analytics app for scRNA-Seq data (single-cell RNA sequencing).

Jupyter Notebook 27 5 Updated Nov 22, 2023

Episcanpy: Epigenomics Single Cell Analysis in Python

Python 144 33 Updated Dec 5, 2024
Jupyter Notebook 1 Updated Dec 12, 2022

A comprehensive tutorial about GWAS and PRS

906 337 Updated Apr 1, 2023
Python 126 31 Updated Jun 13, 2023

A comprehensive library for computational molecular biology

Python 813 116 Updated Jun 10, 2025

For BioHackathon Europe 2021.

Python 30 42 Updated Nov 18, 2022

Python package for processing image-based profiling data

Python 117 39 Updated Jun 10, 2025

🪝 What's the latest version for each database?

Python 27 8 Updated Jun 14, 2025

A terminal-based presentation tool with colors and effects.

Python 4,341 162 Updated Jan 13, 2023

A tool for retrosynthetic planning

Python 678 145 Updated Apr 11, 2025

TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

TypeScript 104,949 12,881 Updated Jun 13, 2025

Implementation of the method proposed in the paper "Efficient Multi-Objective Molecular Optimization in a Continuous Latent Space" by Robin Winter, Floriane Montanari, Andreas Steffen, Hans Briem, …

Python 79 22 Updated Apr 13, 2021

List of all the lessons learned, best practices, and links from my time studying machine learning

1,001 343 Updated Oct 6, 2022

From apprentice to master (CC BY-NC-ND)

JavaScript 2,409 317 Updated Jul 4, 2023

Fork and custom implementation of LineUp Library for Visual Analysis of Multi-Attribute

TypeScript 70 4 Updated May 27, 2019
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