Lists (3)
Stars
Fast genome analysis from unassembled short reads
alphafold3 architecture step by step walkthrough.
Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs
For all the small things that make life easier and should be kept in mind when running projects on Dardel.
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
Plotting scripts for long read sequencing data
vim plugin for DNA sequences and sequencing files (SAM/BAM, PAF, FA/FQ, etc.)
A genomic k-mer counter (and sequence utility) with nice features.
Parser of eggnog ANnotated files using KEGG entries (used in RVanDamme/MAFIN)
hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis
Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
ChongLab / Inspector
Forked from Maggi-Chen/InspectorA tool for evaluate long-read de novo assembly results
An assembly workflow for analysing data in the Earth Biogenome Project pilot project.
Fast genome-wide functional annotation through orthology assignment
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Ultra-fast preprocessing and quality control for long-read sequencing data
A deletion and duplication caller from NGS paired-end data.
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)