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DiffLinker: Equivariant 3D-Conditional Diffusion Model for Molecular Linker Design

Python 333 46 Updated Apr 17, 2024

Code for designing binders to flexible peptides with AlphaFold2 Hallucination

Python 23 2 Updated Dec 21, 2023

Protein hallucination and inpainting with RoseTTAFold

Python 259 67 Updated Mar 30, 2023
Jupyter Notebook 10 2 Updated Jun 16, 2023

Rifdock Library for Conformational Search

C++ 157 48 Updated May 16, 2024

Small_molecule_binder_design_use_pseudocycles

Python 18 3 Updated Nov 19, 2024

A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking

Python 27 8 Updated Apr 3, 2024

Protein Origami via Genetic Fusions

Python 13 8 Updated Sep 19, 2022

A Fragment-Based Protein Docking Tool For Constructing Symmetry Combination Materials

Python 5 1 Updated Nov 13, 2020

protein docking stuff

Python 41 11 Updated Sep 2, 2024

Scripts for executing design of pseudosymmetric components and nanocage design

Shell 5 3 Updated Oct 25, 2024
Python 44 10 Updated Mar 21, 2024

Tools for fast and flexible genome assembly scaffolding and improvement

Python 506 49 Updated Feb 14, 2024

A genome visualization python package for comparative genomics

Python 327 21 Updated May 13, 2025
Perl 2 Updated Apr 15, 2025

Predicting the Transmission Trend of Respiratory Viruses in New Regions via Geospatial Similarity Learning

1 Updated Nov 8, 2023

data and scripts repository for manuscript

1 Updated Oct 19, 2018
1 Updated Mar 12, 2024

Sapiens is a human antibody language model based on BERT.

Jupyter Notebook 61 19 Updated May 14, 2025

BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interface for computer-assisted antibody se…

Python 188 49 Updated May 13, 2025

A tool kit for extracting 16S rRNA genes from genomes for the purpose of building phylogenetic trees.

Python 1 Updated Jun 9, 2018
Perl 10 Updated May 15, 2025

A pipeline to investigate horizontal gene transfer from NGS data

Nextflow 25 7 Updated Apr 30, 2025

An antibody-specific language model focusing on NGL prediction

Python 17 8 Updated Mar 8, 2025

Public repository describing training and testing of AntiBERTa.

Jupyter Notebook 59 14 Updated Apr 14, 2023
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