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Starred repositories
This is the offical code of the paper "Towards Large-scale Chemical Reaction Image Parsing via a Multimodal Large Language Model"
Research language for array processing in the Haskell/ML family
Codebase and CLI for PLAPT: A state-of-the-art protein-ligand binding affinity model for drug discovery
Comprehensive benchmarking of protein-ligand structure prediction methods. (ICML 2024 AI4Science)
Exploring Structured Semantic Prior for Multi Label Recognition with Incomplete Labels [CVPR 2023]
[TOIS24] Denoising Heterogeneous Graph Pre-training Framework for Recommendation
Parameterized Explainer for Graph Neural Network
Explainability methods employed for the DeepFRI protein function algorithm
[NeurIPS'24 Oral] Official repository for the paper "Scale Equivariant Graph Metanetworks"
Code for AAAI 2024 paper "PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein Interaction Prediction"
Geometric GNN Dojo provides unified implementations and experiments to explore the design space of Geometric Graph Neural Networks (ICML 2023)
This is an official implementation for "Self-Supervised Learning with Swin Transformers".
MixMIM: Mixed and Masked Image Modeling for Efficient Visual Representation Learning
Combining Graph Neural Network and Mamba to Capture Local and Global Tissue Spatial Relationships in Whole Slide Images
Insights into the inner workings of transformer models for protein function prediction
Every Hop Etched in Memory: Tokenized Graph Mamba Meets Directed Graph Learning
HKUNLP / RSA
Forked from chang-github-00/RSARetrieved Sequence Augmentation for Protein Representation Learning
Official implementation of HEGNN, a novel high-degree equivariant graph neural network proposed in the NeurIPS 2024 paper 'Are High-Degree Representations Really Unnecessary in Equivariant Graph Ne…
A list of recent papers about Link Prediction.
[EMNLP 2024] HyperBERT: Mixing Hypergraph-Aware Layers with Language Models for Node Classification on Text-Attributed Hypergraphs
Open source implementation of "Vision Transformers Need Registers"
[TNNLS 2025] TransXNet: Learning Both Global and Local Dynamics with a Dual Dynamic Token Mixer for Visual Recognition
ICLR'24 | BioBridge: Bridging Biomedical Foundation Models via Knowledge Graphs
[ISMB '24] Self-BioRAG: Improving Medical Reasoning through Retrieval and Self-Reflection with Retrieval-Augmented Large Language Models
Model for predicting micro-millisecond motions from protein sequence and/or structure