Data Integration, Manipulation and Visualization of Phylogenetic Trees

The book gives comprehensive overviews of phylogenetic tree data integration, manipulation and visualization using a suite of R packages, tidytree, treeio, ggtree and ggtreeExtra. The book has been published by Chapman & Hall/CRC. You can also find it on Amazon.

Name		Name	Last commit message	Last commit date
Latest commit History 268 Commits
cache-objs		cache-objs
css		css
data-backup		data-backup
img		img
latex		latex
.gitignore		.gitignore
00_author.Rmd		00_author.Rmd
01_treeio_importing_tree.Rmd		01_treeio_importing_tree.Rmd
02_tidytree.Rmd		02_tidytree.Rmd
03_treeio_exporting_tree.Rmd		03_treeio_exporting_tree.Rmd
04_ggtree_visualization.Rmd		04_ggtree_visualization.Rmd
05_ggtree_annotation.Rmd		05_ggtree_annotation.Rmd
06_ggtree_manipulation.Rmd		06_ggtree_manipulation.Rmd
07_ggtree_tree_with_data.Rmd		07_ggtree_tree_with_data.Rmd
08_ggtree_with_silhouette.Rmd		08_ggtree_with_silhouette.Rmd
09_ggtree_tree_objects.Rmd		09_ggtree_tree_objects.Rmd
10_ggtree_exts.Rmd		10_ggtree_exts.Rmd
11_ggtree_exts-others.Rmd		11_ggtree_exts-others.Rmd
12_ggtree_utilities.Rmd		12_ggtree_utilities.Rmd
13_ggtree_gallery.Rmd		13_ggtree_gallery.Rmd
9781032233574_cover_review.png		9781032233574_cover_review.png
A-app-faq.Rmd		A-app-faq.Rmd
A-app-fig-tab.Rmd		A-app-fig-tab.Rmd
A-app-tools.Rmd		A-app-tools.Rmd
B-references.Rmd		B-references.Rmd
Introduction.Rmd		Introduction.Rmd
Makefile		Makefile
README.md		README.md
_bookdown.yml		_bookdown.yml
_output.yaml		_output.yaml
apa.csl		apa.csl
book-cover.R		book-cover.R
book-cover.png		book-cover.png
conflicted.R		conflicted.R
export_pdf.R		export_pdf.R
ggtree-comicR.Rmd		ggtree-comicR.Rmd
ggtree-identity.Rmd		ggtree-identity.Rmd
ggtree-plotly.Rmd		ggtree-plotly.Rmd
hdvips.def		hdvips.def
hpdftex.def		hpdftex.def
hxetex.def		hxetex.def
hyperref.sty		hyperref.sty
index.Rmd		index.Rmd
krantz.cls		krantz.cls
mind-map.R		mind-map.R
others.md		others.md
pdfmark.def		pdfmark.def
publications.md		publications.md
references.bib		references.bib
session-info.Rmd		session-info.Rmd
setup-git-branches.md		setup-git-branches.md
setup.R		setup.R
software-info.Rmd		software-info.Rmd
software-info.md		software-info.md
software-link.R		software-link.R
treedata-book.Rproj		treedata-book.Rproj
vanessa_ccir.xlsx		vanessa_ccir.xlsx
vanessa_ccir_1.R		vanessa_ccir_1.R
vanessa_ccir_2.R		vanessa_ccir_2.R
vanessa_ccir_2.xlsx		vanessa_ccir_2.xlsx
vanessa_ccir_3.xlsx		vanessa_ccir_3.xlsx
vanessa_ccir_claude_debug_1_1.R		vanessa_ccir_claude_debug_1_1.R
vanessa_ccir_claude_debug_1_2.R		vanessa_ccir_claude_debug_1_2.R
vanessa_ccir_claude_debug_1_3.R		vanessa_ccir_claude_debug_1_3.R
vanessa_ccir_claude_debug_1_4.R		vanessa_ccir_claude_debug_1_4.R
vanessa_ccir_error_missing_true_false.R		vanessa_ccir_error_missing_true_false.R
vanessa_ccir_genomic.csv		vanessa_ccir_genomic.csv
vanessa_ccir_metadata.csv		vanessa_ccir_metadata.csv
vanessa_ccir_resistance.csv		vanessa_ccir_resistance.csv
vanessa_ccir_sample.R		vanessa_ccir_sample.R
vanessa_ccir_test_1.R		vanessa_ccir_test_1.R

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Repository files navigation

Data Integration, Manipulation and Visualization of Phylogenetic Trees

About

Releases

Packages

Languages

alignmark/treedata-book

Folders and files

Latest commit

History

Repository files navigation

Data Integration, Manipulation and Visualization of Phylogenetic Trees

About

Resources

Stars

Watchers

Forks

Releases

Packages 0

Languages

Packages