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Name		Name	Last commit message	Last commit date
Latest commit History 10 Commits
ParallelScan.c		ParallelScan.c
ParallelScan.py		ParallelScan.py
README.md		README.md
SmithWaterman.py		SmithWaterman.py
main.c		main.c
string_generator.py		string_generator.py
strings.txt		strings.txt

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Smith-Waterman Acceleration on MemPool

This repository contains the code to accelerate Smith-Waterman algorithm on MemPool

Contents

main.c: The program dividing the algorithm on multiple Mempool cores
strings.txt: The text file containing the randomised strings of A/T/C/G
string_generator.py: Python code to generate strings.txt

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