A data package that provides users of the {phylotypr} package with the
reference data needed to classify 16S rRNA gene sequences using the
RDP’s trainset19 taxonomy reference. The data were originally posted by
the RDP and reformatted for use with mothur. Both the “rdp” and “pds”
versions of the trainset19 reference data are available as
trainset19_rdp and trainset19_pds, respectively.
You can install the development version of trainset19 from GitHub with:
# install.packages("devtools")
devtools::install_github("mothur/trainset19")Here is a profile of the trainset19_rdp and trainset19_pds reference
data:
library(trainset19)
dim(trainset19_rdp)
#> [1] 24642 3dim(trainset19_pds)
#> [1] 24762 3