-
BioPhi Public
Forked from Merck/BioPhiBioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interface for computer-assisted antibody se…
Python MIT License UpdatedMay 13, 2025 -
openff-bespokefit Public
Forked from openforcefield/openff-bespokefitAutomated tools for the generation of bespoke SMIRNOFF format parameters for individual molecules.
Python MIT License UpdatedMar 12, 2025 -
-
PLACER Public
Forked from baker-laboratory/PLACERPLACER is graph neural network for local prediction of protein-ligand conformational ensembles.
Python Other UpdatedFeb 13, 2025 -
boltz-generalized-covalent-modification Public
Forked from benf549/boltz-generalized-covalent-modificationAllows using Boltz to predict the structure of arbitrary covalent modifications / Non-Canonical Amino Acids. Covalent bonds are enforced. Also walks you through injecting a new residue into the CCD.
Jupyter Notebook UpdatedJan 20, 2025 -
-
-
byteff Public
Forked from bytedance/byteffbyteff source code
Python Apache License 2.0 UpdatedJan 7, 2025 -
pensa Public
Forked from drorlab/pensaPENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.
Python MIT License UpdatedJan 5, 2025 -
statements Public
Forked from RILAB/statementsSuccessful Job Applications and Grants
Other UpdatedJan 2, 2025 -
-
Chi-T Public
Forked from zyzzyva23/Chi-TA Python-based tool for the design of active and orthogonal tRNAs.
Python UpdatedDec 19, 2024 -
ConformerDependentCharges Public
Forked from MobleyLab/ConformerDependentChargesJupyter Notebook MIT License UpdatedNov 18, 2024 -
dart_2024 Public
Forked from carsonthoreen/dart_2024Scripts for processing and analysis of DART results.
Python UpdatedNov 18, 2024 -
SalisLabCode Public
Forked from hsalis/SalisLabCodeModels, design algorithms, and other software related to Salis lab publications
Python UpdatedNov 6, 2024 -
seqm_scoring Public
Forked from ETHmodlab/seqm_scoringCombining de novo molecular design with semiempirical protein–ligand binding free energy calculation.
Python MIT License UpdatedOct 21, 2024 -
CaLM Public
Forked from oxpig/CaLMProtein language model trained on coding DNA
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 20, 2024 -
qProtein Public
Forked from bj600800/qProteinA platform for structural proteomics analysis.
Python Apache License 2.0 UpdatedOct 8, 2024 -
CodonTransformer Public
Forked from Adibvafa/CodonTransformerThe ultimate tool for codon optimization, transforming protein sequences into optimized DNA sequences specific for your target organisms.
Python Apache License 2.0 UpdatedSep 14, 2024 -
PocketGen Public
Forked from zaixizhang/PocketGenImplementation of PocketGen: Generating Full-Atom Ligand-Binding Protein Pockets
Python MIT License UpdatedSep 14, 2024 -
openmmtools Public
Forked from choderalab/openmmtoolsA batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine.
Python MIT License UpdatedSep 13, 2024 -
computational-chemistry Public
Forked from kimjc95/computational-chemistry8676 Google Colaboratory Notebooks for Computational Biochemistry
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedSep 4, 2024 -
GGAssembler Public
Forked from Fleishman-Lab/GGAssemblerCreate a cost sensitive degenerate codon sequence
Python GNU Affero General Public License v3.0 UpdatedAug 2, 2024 -
nucleus Public
Forked from bnext-bio/nucleusb.next nucleus open-source cell developer kit
Jupyter Notebook MIT License UpdatedJul 31, 2024 -
-
mace Public
Forked from ACEsuit/maceMACE - Fast and accurate machine learning interatomic potentials with higher order equivariant message passing.
Python Other UpdatedJul 11, 2024 -
DASH-tree Public
Forked from rinikerlab/DASH-treePartial Charge assignment for Molecular Dynamics
Python MIT License UpdatedJul 8, 2024 -
-
mdtraj Public
Forked from jeremyleung521/mdtrajAn open library for the analysis of molecular dynamics trajectories
Python GNU Lesser General Public License v2.1 UpdatedJul 4, 2024 -
ABFE_workflow Public
Forked from bigginlab/ABFE_workflowThis is a SnakeMake based workflow for ABFE calculations that can be easily scaled in a high-throughput manner via Slurm for example.
Python GNU General Public License v3.0 UpdatedJul 2, 2024
{{ message }}