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tskit Public
Forked from tskit-dev/tskitPopulation-scale genomics
Python MIT License UpdatedMay 6, 2025 -
tutorials Public
Forked from tskit-dev/tutorialsA set of tutorials for msprime and tskit.
Jupyter Notebook Creative Commons Attribution 4.0 International UpdatedMay 1, 2025 -
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tsinfer Public
Forked from tskit-dev/tsinferInfer a tree sequence from genetic variation data.
C GNU General Public License v3.0 UpdatedJan 16, 2025 -
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stdpopsim Public
Forked from popsim-consortium/stdpopsimA library of standard simulation models for msprime
Python MIT License UpdatedApr 10, 2021 -
msprime Public
Forked from tskit-dev/msprimeA reimplementation of Hudson's classical ms simulator for modern data sets.
C GNU General Public License v3.0 UpdatedMar 21, 2021 -
SimPrily Public
SimPrily: A Python framework to simplify high-throughput genomic simulations. https://doi.org/10.1016/j.softx.2018.09.003
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workshops Public
Forked from popsim-consortium/workshopsA collection of workshop material
Jupyter Notebook UpdatedFeb 22, 2021 -
genomatnn Public
Forked from grahamgower/genomatnnPredicts adaptive introgression using a CNN trained on genotype matrices.
Python Other UpdatedDec 7, 2020 -
manuscript Public
Forked from popsim-consortium/manuscriptPopSim consortium manuscript
TeX UpdatedMar 30, 2020 -
osgvo-docker-pilot Public
Forked from opensciencegrid/osgvo-docker-pilotA Docker container build emulating a worker node for the OSG VO, using token authentication.
Shell UpdatedJan 23, 2020 -
SMBE-SGE-2019 Public
Forked from DRL/SMBE-SGE-2019Material for SMBE-SGE-2019 workshop
Jupyter Notebook GNU General Public License v3.0 UpdatedJun 19, 2019 -
academic-kickstart Public
Forked from HugoBlox/theme-academic-cvEasily create a beautiful website using Academic and Hugo
TeX MIT License UpdatedApr 28, 2019 -
AJ_ABC Public
Code for genomic simulations and Approximate Bayesian Computation for Gladstein and Hammer (2019) https://doi.org/10.1093/molbev/msz047
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RNA-Seq-in-the-Cloud Public
Forked from NCBI-Hackathons/RNA-Seq-in-the-CloudJupyter Notebook MIT License UpdatedMar 15, 2019 -
ABC_results_AJ Public
ABC results for "Substructured population growth in the Ashkenazi Jews inferred with Approximate Bayesian Computation"
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pop_gen_cnn Public
Forked from flag0010/pop_gen_cnnShell GNU General Public License v3.0 UpdatedSep 13, 2018 -
dask-dataframe-benchmarking Public
Forked from StrikingLoo/dask-dataframe-benchmarkingA Jupyter Notebook I made to try out dask's Dataframes
Jupyter Notebook UpdatedAug 31, 2018 -
Moal Public
MOdeling goALs: A bayesian approach to timely goal completion
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container_camp_workshop_2018 Public
Forked from CyVerse-learning-materials/container_camp_workshop_2018Python UpdatedFeb 26, 2018 -
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jetstream-xsede-illo Public
Forked from johnsolk/jetstream-xsede-illoillo with Jetstream/XSEDE cloud computing platform to practice for dibsi and training
Jupyter Notebook UpdatedApr 20, 2017 -
2013-khmer-counting Public
Forked from NotTheKmers/2013-khmer-countingPaper code: "These are not the k-mers you are looking for: efficient online k-mer counting using a probabilistic data structure"
Jupyter Notebook UpdatedMar 28, 2017 -
GERMLINE Public
Forked from sgusev/GERMLINELinear time detection of Identity by Descent
C++ UpdatedJul 22, 2011
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