This repository includes all the code and intermediate files used to analyze the data generated during the Spanish Microbiome Project and discussed in this manuscript: Latorre-Pérez, A., Hernández, M., Iglesias, J.R. et al. The Spanish gut microbiome reveals links between microorganisms and Mediterranean diet. Sci Rep 11, 21602 (2021). https://doi.org/10.1038/s41598-021-01002-1
Commands for bioinformatic analyses can be found in "Qiime2-commnads.sh", while the code used for the statistical analysis and data visualization is available on Stats-and-Figures.Rmd.