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Issues: ay-lab/FitHiChIP

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19 Open 77 Closed
19 Open 77 Closed
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Issues list

cat: /volumes/easystore/HiChIP_CTCF/Matrix_BinSize5000/sample.interactions.initial.bed: No such file or directory - FitHiChIP is quiting
#107 opened Jul 23, 2024 by hd931
FitHiChIP_Singularity.sh ERROR
#106 opened Jun 12, 2024 by yxralba088
Differential loop analysis
#105 opened Feb 29, 2024 by helenhuangmath
1
FitHiChIP requests different input than specified in documentation
#104 opened Feb 4, 2024 by roniweiss12
1
An easy way to get the whole genome expected interaction matrix
#103 opened Dec 18, 2023 by zhangylab
1
Error in .compressOffsets(y, offset = offset) : offsets must be finite values Calls: ApplyEdgeR -> exactTest -> mglmOneGroup -> .compressOffsets
#102 opened Nov 17, 2023 by Gemma-Zhang-326
1
How to get common loops between two samples
#101 opened Nov 8, 2023 by remeseirogrp
4
option to fragment interactions?
#100 opened Nov 1, 2023 by hugch2020
1
Lower number of Significant Interactions
#98 opened Sep 14, 2023 by koushik20
1
mcool format as an input
#96 opened May 11, 2023 by MariaMetelova
1
Error while using FitHiChIP_Docker.sh - Docker Image might be outdated
#94 opened Apr 26, 2023 by dvesposito
1
Error in smooth.spline
#93 opened Apr 19, 2023 by evaham1
1
Running FitHiChIP error for .hic data
#91 opened Feb 17, 2023 by cauyrd
2
fitHiChIP produces very small amount of peaks for H3K4me3 and H3K27ac
#89 opened Dec 22, 2022 by FALab500
1
Optional parameter to disable checking for HiCPro
#88 opened Nov 18, 2022 by jeremyd85
3
Unable to handle library error
#85 opened Oct 18, 2022 by nahmed125
7
Normalized contact value?
#80 opened Jul 13, 2022 by yanchunzhang
7
ChIPSeqAlign file for differential analysis
#71 opened Jan 23, 2022 by xumai-du
9
virtual 4C maps from FitHiChIP output
#3 opened Dec 27, 2018 by gouthamatla
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