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mpicbg Public
Fiji module for image transformation and related algorithms
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BioImagingAI Public
Forked from aicjanelia/BioImagingAISource materials for a textbook on AI in Microscopy
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedApr 22, 2025 -
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bigdataviewer-playground Public
Forked from bigdataviewer/bigdataviewer-playgroundJava BSD 2-Clause "Simplified" License UpdatedFeb 8, 2024 -
bigdataviewer-vistools Public
Forked from bigdataviewer/bigdataviewer-vistoolsHelpers to use BigDataViewer as a quick visualization tool in other projects.
Java BSD 2-Clause "Simplified" License UpdatedFeb 6, 2024 -
mastodon Public
Forked from mastodon-sc/mastodonMastodon – a large-scale tracking and track-editing framework for large, multi-view images.
Java BSD 2-Clause "Simplified" License UpdatedOct 15, 2023 -
SAM_service Public
Forked from JaneliaSciComp/SAM_serviceweb service to supply segment_anything models, when provided with an image
Python BSD 3-Clause "New" or "Revised" License UpdatedSep 15, 2023 -
mobie-io Public
Forked from mobie/mobie-ioJava BSD 2-Clause "Simplified" License UpdatedAug 18, 2023 -
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model-runner-java Public
Forked from bioimage-io/JDLLJava BSD 3-Clause "New" or "Revised" License UpdatedFeb 10, 2023 -
awesome-janelia-software Public
Forked from JaneliaSciComp/awesome-janelia-softwareA curated list of awesome Janelia software
Creative Commons Zero v1.0 Universal UpdatedAug 16, 2021 -
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bigdataviewer-render-app Public
On the fly 3D visualization of render database stacks
Java BSD 2-Clause "Simplified" License UpdatedAug 6, 2020 -
imagej-tensorflow Public
Forked from imagej/imagej-tensorflowImageJ/TensorFlow integration library.
Java Other UpdatedJan 13, 2018 -
fiji-scripts Public
A wild collection of useful and partially broken scripts for Fiji and TrakEM2
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ImgLib2Access Public
An ImgLib2 extension of Sage and Unser's (2001) ImageAccess. A simplification layer for teaching image processing.
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volume-renderer Public
Primitive ImgLib2 volume renderer
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parallel-elastic-alignment Public
Forked from saalfeldlab/parallel-elastic-alignmentA script collection and workflow description to parallelize elastic alignment with TrakEM2 on a cluster
Shell GNU General Public License v2.0 UpdatedMar 28, 2014
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