Stars
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Open source code for AlphaFold 2.
A flexible tool for creating, organizing, and sharing visualizations of live, rich data. Supports Torch and Numpy.
Voilà turns Jupyter notebooks into standalone web applications
A simple Python debugger and profiler that generates animated visualizations of program flow, useful for algorithm learning.
StarDist - Object Detection with Star-convex Shapes
Cloud-native genomic dataframes and batch computing
Software package for assigning SARS-CoV-2 genome sequences to global lineages.
CmdStanPy is a lightweight interface to Stan for Python users which provides the necessary objects and functions to compile a Stan program and fit the model to data using CmdStan.
A library to facilitate machine learning on multi-dimensional images.
A framework for easy application of established machine learning techniques on large, multi-dimensional images.
Use gpt to summarize abstracts for a pubmed query
Resources for calling and describing the circulating lineages of SARS-CoV-2
The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
Tools for handling FIB-SEM data and annotations
User-submitted RNA-seq data analysis tools for BioJupies.
DART-ID: retention time alignment and peptide identification confidence updates
RASPP algorithm for structure-guided protein recombination
Protein Cluster Quant is a Java software for the analysis of complex proteomics samples (quantitative or not). It helps to reduce the redundancy of the peptide-to-protein relationship and to visual…
Models and scripts to bootstrap and refine 3D instance segmentation models from sparse 2D labels
SlavovLab / HIquant
Forked from nslavov/HIquantHIquant: An algorithm for quantifying homologous proteins and proteoforms from bottom-up mass-spec data