Stars
DSPy: The framework for programming—not prompting—language models
An AI agent that writes (actually useful) code for you
Generalized differential expression, including differential variability and coexpression
A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.
Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.
🤗 Diffusers: State-of-the-art diffusion models for image, video, and audio generation in PyTorch and FLAX.
Direct estimation of mean and covariance from single cell RNA seq experiments
Documentation for the cellxgene product
SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
A collection of useful code snippets with usage examples.
Extensible, parallel implementations of t-SNE
2-2000x faster ML algos, 50% less memory usage, works on all hardware - new and old.
scikit-learn: machine learning in Python
The Self-Assembling-Manifold (SAM) algorithm.
Cluster submission of velocyto alignment for RNA velocity analysis.
Single cell type annotation guided by cell atlases, with freedom to be queer
Fast pairwise sequence alignment using SeqAn, in Python.