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@viralemergence The Verena Institute

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    65 repositories

    • virion

      Public
      An open database of vertebrate-virus interactions
      virustaxonomydatasetecological-networkvertebrate
      R
      •8•40•29•2•Updated May 23, 2025May 23, 2025

    • tatat

      Public
      Transcriptome Assembly, Thinning, and Annotation Tool
      Python
      •0•0•0•0•Updated May 22, 2025May 22, 2025

    • synbias

      Public
      A review/simulation study of how synzootic interactions bias estimates of parasite richness.
      Julia
      •0•0•0•0•Updated May 22, 2025May 22, 2025

    • wdds

      Public
      Convenient Storage location for Wild Disease Data Standard files
      Creative Commons Zero v1.0 Universal
      •0•0•5•0•Updated May 20, 2025May 20, 2025

    • SNVler

      Public
      Tools for assembling genomes for Orthohantavirus sinnombreense
      Python
      •0•0•0•0•Updated May 13, 2025May 13, 2025

    • mezap-utils

      Public
      Python
      •0•1•0•0•Updated Apr 29, 2025Apr 29, 2025

    • wddsWizard

      Public
      R
      •
      Other
      •0•0•15•0•Updated Apr 25, 2025Apr 25, 2025

    • bathaus

      Public
      how does urban roosting shape viral diversity and zoonotic risk in bats?
      R
      •0•0•0•0•Updated Apr 9, 2025Apr 9, 2025

    • r-reproducible-repo

      Public template
      Template for reproducible R projects.
      R
      •
      MIT License
      •0•0•0•0•Updated Apr 9, 2025Apr 9, 2025

    • .github

      Public
      Github header
      1•0•0•0•Updated Apr 2, 2025Apr 2, 2025

    • vcds

      Public
      A template that meets the minimum data standard for vector competence experiments 🦟✍️🔢
      MIT License
      •0•0•0•0•Updated Apr 2, 2025Apr 2, 2025

    • comet-standard

      Public archive
      What you're looking for is at viralemergence/vcds
      0•0•0•0•Updated Apr 2, 2025Apr 2, 2025

    • zika-rnaseq-analysis

      Public
      Python
      •0•2•0•0•Updated Mar 26, 2025Mar 26, 2025

    • pharos-standard

      Public archive
      A template that meets the minimum standard for wildlife disease data 🦇🦠🗺️
      MIT License
      •0•0•2•0•Updated Mar 4, 2025Mar 4, 2025

    • PoxHost

      Public
      Predicting the poxvirus-mammal network with viral genetic features
      R
      •1•0•0•0•Updated Feb 12, 2025Feb 12, 2025

    • office-hours-github-example

      Public
      Python
      •0•0•0•0•Updated Feb 4, 2025Feb 4, 2025

    • viralemergence.r-universe.dev

      Public
      R universe instance for the Verena Institute
      MIT License
      •0•0•0•0•Updated Jan 16, 2025Jan 16, 2025

    • insectDisease

      Public
      An R package for working with the Ecological Database of the World's Insect Pathogens (EDWIP)
      TeX
      •
      GNU General Public License v3.0
      •1•14•0•0•Updated Jan 15, 2025Jan 15, 2025

    • epizootic

      Public
      An R package for spatially explicit population models of disease transmission in wildlife
      R
      •
      GNU General Public License v3.0
      •1•4•0•0•Updated Sep 30, 2024Sep 30, 2024

    • pnpc

      Public
      What is the relationship between pathogens & planetary change?
      R
      •
      Creative Commons Attribution 4.0 International
      •2•2•0•0•Updated Sep 27, 2024Sep 27, 2024

    • fingerprint-preprint

      Public
      Code for Gibb et al. (2024)
      R
      •0•0•0•0•Updated Jun 28, 2024Jun 28, 2024

    • pharos-core

      Public
      Workflows to format & standardize data into the Pharos data standard for upload 🔆
      R
      •
      Creative Commons Attribution 4.0 International
      •1•0•0•0•Updated May 20, 2024May 20, 2024

    • pharos-api

      Public
      Python
      •
      MIT License
      •0•0•13•0•Updated May 9, 2024May 9, 2024

    • pharos-frontend

      Public
      TypeScript
      •
      MIT License
      •0•0•18•0•Updated May 9, 2024May 9, 2024

    • pharos-documentation

      Public
      Markdown files for PHAROS website
      0•1•9•3•Updated May 8, 2024May 8, 2024

    • pharos-database

      Public
      Pharos AWS RDS Template
      Shell
      •
      MIT License
      •0•0•0•0•Updated May 8, 2024May 8, 2024

    • hantaro

      Public
      Predicting rodent reservoirs of orthohantaviruses
      R
      •1•0•0•0•Updated Feb 26, 2024Feb 26, 2024

    • aireport

      Public
      Some data visualization for a white paper on AI and viral emergence
      R
      •0•0•0•0•Updated Feb 3, 2024Feb 3, 2024

    • battree

      Public
      Visualizing the bat tree of life and a bunch of Verena stuff on top of it
      R
      •0•0•0•0•Updated Jan 21, 2024Jan 21, 2024

    • arbo-comp

      Public
      Vector competence of arboviruses
      Creative Commons Attribution 4.0 International
      •1•0•0•0•Updated Jan 19, 2024Jan 19, 2024
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