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112 repositories

SCREEN2.0
Public
TypeScript
•
MIT License
•0•5•35•6•Updated Jun 30, 2025Jun 30, 2025
psychscreen
Public
PsychSCREEN
TypeScript
•
MIT License
•0•2•0•0•Updated Jun 30, 2025Jun 30, 2025
igSCREEN
Public
TypeScript
•
MIT License
•0•1•18•0•Updated Jun 30, 2025Jun 30, 2025
genomebrowser
Public
TypeScript
•0•0•8•0•Updated Jun 30, 2025Jun 30, 2025
bkresge
Public
Jupyter Notebook
•0•0•0•0•Updated Jun 27, 2025Jun 27, 2025
Factorbook2.0
Public template
TypeScript
•0•3•12•5•Updated Jun 26, 2025Jun 26, 2025
psychscreen-ui-components
Public
common UI components for PsychSCREEN
TypeScript
•
MIT License
•0•1•32•0•Updated Jun 24, 2025Jun 24, 2025
zlabwiki
Public
MIT License
•0•0•0•0•Updated Jun 20, 2025Jun 20, 2025
logojs-package
Public
Javascript package for embedding sequence logos
javascript svg bioinformatics data-visualization javascript-library sequence-logo reactjs dna-logo
JavaScript
•
MIT License
•5•15•4•7•Updated Jun 16, 2025Jun 16, 2025
signal-service
Public
Service for signal and peak data
TypeScript
•
MIT License
•0•2•0•8•Updated Jun 5, 2025Jun 5, 2025
TEMP2
Public
Algorithm to detect germline and de novo transposon insertions
Shell
•
GNU General Public License v3.0
•6•28•1•0•Updated Apr 10, 2025Apr 10, 2025
download-encode
Public
Jupyter Notebook
•0•0•0•0•Updated Apr 7, 2025Apr 7, 2025
nshedd
Public
Nicole's code and stuff
Python
•0•0•0•0•Updated Feb 21, 2025Feb 21, 2025
genomebrowser-app
Public
TypeScript
•1•1•0•0•Updated Jan 30, 2025Jan 30, 2025
ENCODE-cCREs
Public
Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements
Shell
•6•24•6•0•Updated Jan 2, 2025Jan 2, 2025
dnaseseq-workflow
Public
Kotlin
•0•0•0•0•Updated Dec 17, 2024Dec 17, 2024
cluster-buster
Public
C++
•2•9•1•1•Updated Sep 27, 2024Sep 27, 2024
VIPER
Public
Variant interpretation pipeline and resource
Shell
•
MIT License
•0•0•0•0•Updated Jun 27, 2024Jun 27, 2024
SCREEN
Public
JavaScript
•
MIT License
•2•9•61•9•Updated Mar 1, 2024Mar 1, 2024
dictys
Public
Python
•
GNU Affero General Public License v3.0
•0•0•0•0•Updated Feb 20, 2024Feb 20, 2024
docker-nss
Public
libnss plugin for Docker
C
•7•0•0•0•Updated Jan 26, 2024Jan 26, 2024
libzdock
Public
ZDOCK predictions and PDB structures in C++ and Python
cpp pdb structure transformation receptor ligand zdock libpdb m-zdock zlab
C++
•
BSD 2-Clause "Simplified" License
•5•13•0•0•Updated Jan 1, 2024Jan 1, 2024
ATLAS
Public
Altered TCR Ligand Affinities and Structures
HTML
•
GNU General Public License v3.0
•2•10•5•0•Updated Dec 1, 2023Dec 1, 2023
chrombpnet-workflow
Public
Krews workflow for running ChromBPNet
Python
•
MIT License
•0•0•0•0•Updated Nov 18, 2023Nov 18, 2023
krews
Public
KREWS Scientific Data Pipeline Framework
analysis-pipeline kotlin workflows
Kotlin
•0•3•0•0•Updated Oct 25, 2023Oct 25, 2023
bigwig-reader
Public
Typescript library for reading BigWig and BigBed files.
visualization bioinformatics typescript-library reader dataloader bigwig-reader bigbed-files
TypeScript
•
MIT License
•6•8•0•3•Updated Jul 18, 2023Jul 18, 2023
motif-workflow
Public
Kotlin
•0•0•3•0•Updated May 20, 2023May 20, 2023
cabbagelooper
Public
Cabbage looper
genome genome-annotation genome-assembly
CSS
•
BSD 3-Clause "New" or "Revised" License
•1•2•0•4•Updated Apr 12, 2023Apr 12, 2023
chrombpnet
Public
Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
Jupyter Notebook
•
MIT License
•47•0•0•1•Updated Mar 9, 2023Mar 9, 2023
bigwig-reader-gcp
Public
TypeScript
•
MIT License
•0•0•0•5•Updated Mar 5, 2023Mar 5, 2023

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