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    50 repositories

    • BAL-Pf2

      Public
      Pf2 analysis of BAL samples
      Python
      •0•0•1•0•Updated Jul 4, 2025Jul 4, 2025

    • bi-cytok

      Public
      Modeling bispecific cytokine fusions.
      Python
      •
      MIT License
      •1•0•1•1•Updated Jul 4, 2025Jul 4, 2025

    • cellcommunication-Pf2

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 2, 2025Jul 2, 2025

    • mrsa-ca

      Public
      Python
      •0•0•0•6•Updated Jul 2, 2025Jul 2, 2025

    • parafac2

      Public
      A scalable implementation of PARAFAC2 with line search.
      tensorstensorlyparafac2
      Python
      •
      MIT License
      •1•2•0•0•Updated Jul 2, 2025Jul 2, 2025

    • Pf2-scRNAseq

      Public
      tensorsrisescrnaseqparafac2
      Jupyter Notebook
      •
      MIT License
      •0•1•4•2•Updated Jul 2, 2025Jul 2, 2025

    • barcoded-Pf2

      Public
      Pf2 exploration of cell-to-cell heterogeneity with barcoded cell lines.
      cancerscrna-seqcurrentbarcoding
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 25, 2025Jun 25, 2025

    • asmlab.org

      Public
      Meyer lab website
      jekylllaboratorygithub-pageswebsiteacademic
      TeX
      •0•2•4•0•Updated Jun 14, 2025Jun 14, 2025

    • RISE

      Public
      PARAFAC2 for modeling multi-sample single-cell RNAseq.
      factorizationtensorstensorlyparafac
      Jupyter Notebook
      •
      MIT License
      •0•4•1•0•Updated Jun 7, 2025Jun 7, 2025

    • liver-iri

      Public
      Explore orthotopic liver transplantation data
      Python
      •0•0•0•0•Updated May 15, 2025May 15, 2025

    • tensorly

      Public
      TensorLy: Tensor Learning in Python.
      Python
      •
      Other
      •295•0•0•0•Updated May 3, 2025May 3, 2025

    • DDMC

      Public
      Clusters phosphoproteomics data based on a combination of the sequence information and abundance changes over conditions.
      canceracademic-projectphosphoproteomicsdrug-resistance
      Python
      •1•1•0•2•Updated Apr 24, 2025Apr 24, 2025

    • tfac-mrsa

      Public archive
      A multi-omic view of MRSA infection using tensor factorization
      Python
      •
      MIT License
      •1•0•0•0•Updated Apr 17, 2025Apr 17, 2025

    • tensorpack

      Public
      A collection of tensor methods from the Meyer lab.
      Python
      •
      MIT License
      •2•3•1•1•Updated Apr 13, 2025Apr 13, 2025

    • mechanismSerology

      Public archive
      Inferring antibody species from systems serology with a mechanistic binding model.
      Python
      •0•0•0•0•Updated Apr 13, 2025Apr 13, 2025

    • cell-selective-ligands

      Public archive
      A modeling perspective on cell selective ligands
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 13, 2025Apr 13, 2025

    • tfac-CoH

      Public archive
      Decoding cytokine signaling networks in cancer patients
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 8, 2025Apr 8, 2025

    • cmtf-pls

      Public
      A Partial Least Squares (PLS) implementation in CMTF.
      Python
      •
      MIT License
      •0•0•1•1•Updated Feb 22, 2025Feb 22, 2025

    • valentBind

      Public
      The multivalent binding model implemented in Python.
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 24, 2024Nov 24, 2024

    • tensordata

      Public
      A common repository for tensor structured datasets.
      Python
      •
      MIT License
      •0•1•0•0•Updated Nov 23, 2024Nov 23, 2024

    • fit-framework

      Public
      Framework for fitting least squares problem involving variable parameters that may be shared across multiple samples.
      Python
      •0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • cetuximab-binding-model

      Public
      Modeling ADCC cytokine release assay with binding model.
      Jupyter Notebook
      •0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • tensor_review

      Public archive
      The structure is the message: preserving experimental context through tensor decomposition
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jul 12, 2024Jul 12, 2024

    • FcRn-trafficking

      Public archive
      Trafficking model of FcRn to explain the effects of failed release at the cell surface.
      scienceinferenceimmunologyacademic-project
      R
      •
      MIT License
      •0•1•0•0•Updated Jun 30, 2024Jun 30, 2024

    • Barney-Peyton

      Public archive
      Code for modeling performed in Barney et al.
      biosignaling-pathwaysregression
      MIT License
      •0•0•0•0•Updated Jun 30, 2024Jun 30, 2024

    • gc-valent

      Public archive
      Exploring what valency does to IL-2.
      immunologyacademic-projectuclamanuscriptcytokine-receptors
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jun 30, 2024Jun 30, 2024

    • FcRegression.jl

      Public archive
      Study Fc antibody dynamics using a multivalent binding model
      Julia
      •0•2•6•0•Updated Jun 30, 2024Jun 30, 2024

    • IL4-model

      Public archive
      Jupyter Notebook
      •0•2•0•0•Updated Jun 30, 2024Jun 30, 2024

    • tHMM

      Public
      A general Python framework for using hidden Markov models on binary trees or cell lineage trees.
      inferencebioengineeringheterogeneitycell-biologydrug-response
      Python
      •
      MIT License
      •1•10•2•5•Updated Apr 12, 2024Apr 12, 2024

    • tHMMsim

      Public
      Python
      •
      MIT License
      •0•0•0•3•Updated Apr 3, 2024Apr 3, 2024
    0