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    17 repositories

    • ibis-publication

      Public
      Ibis package for external use (released with publication)
      Python
      •
      GNU General Public License v3.0
      •0•4•0•0•Updated May 3, 2025May 3, 2025

    • ibis-graphormer-training

      Public
      Training scripts for IBIS Graphormer models for publication
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 24, 2025Mar 24, 2025

    • ibis-transformer-training

      Public
      Training scripts for IBIS Transformer models for publication
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 24, 2025Mar 24, 2025

    • NLPPrecursor

      Public
      NLPPrecursor is a tool to identify RiPP precursor peptide ORFs and subsequently cleave them using deep learning.
      Python
      •
      GNU General Public License v3.0
      •2•5•1•2•Updated Jul 25, 2024Jul 25, 2024

    • ec_chem_machacks2

      Public
      < 10000 div class="Box-sc-g0xbh4-0 hsKqXK">
      A repository for coordinating the dataset and problem description for the 2022 MacHacks Event. The task is to predict enzyme commission numbers from chemical reaction features.
      2•4•0•0•Updated Jan 22, 2022Jan 22, 2022

  • spark-tutorial

    Public
    Jupyter Notebook
    •1•0•0•0•Updated Jul 30, 2021Jul 30, 2021

  • GilsonSDK

    Public
    Gilson GSIOC SDK for Microsoft .Net written in C#
    C#
    •
    MIT License
    •1•0•0•0•Updated Apr 30, 2021Apr 30, 2021

  • prism-releases

    Public
    PRISM source code public releases
    Java
    •4•8•2•0•Updated Feb 8, 2021Feb 8, 2021

  • bacdive-scrape

    Public
    Jupyter Notebook
    •1•0•0•0•Updated Dec 14, 2020Dec 14, 2020

  • clams-release

    Public
    Sensitive peak finder for LCMS results
    R
    •1•0•0•0•Updated Jun 24, 2019Jun 24, 2019

  • grape-release

    Public
    GRAPE official release repo
    Java
    •3•0•3•0•Updated Jan 28, 2019Jan 28, 2019

  • lemons

    Public
    LEMONS: Library for the Enumeration of MOdular Natural Structures
    Java
    •0•6•0•0•Updated Jan 23, 2019Jan 23, 2019

  • InterProWrapper

    Public
    Python
    •1•0•0•0•Updated Jan 8, 2019Jan 8, 2019

  • wasp

    Public
    Web Application Standard Package
    Java
    •0•0•0•0•Updated Aug 8, 2017Aug 8, 2017

  • garlic-release

    Public
    GARLIC official release repo
    Java
    •3•0•1•0•Updated Oct 4, 2016Oct 4, 2016

  • enums-releases

    Public
    Public releases of the 'enums' package required by multiple Magarvey lab programs
    Java
    •1•0•0•0•Updated Oct 2, 2016Oct 2, 2016

  • prism-statistical-methods

    Public
    Java
    •1•0•0•0•Updated Sep 4, 2015Sep 4, 2015
    • 0