8000 combat-sars-cov-2 repositories · GitHub
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    10 repositories

    • workbench-cli

      Public
      Workbench-cli is a command-line shell and scripting interface for Galaxy, Irida and other various popular bioinformatics platforms, envisioned to be a Swiss Army knife designed to make life easier for those who love hacking away at the command prompt.
      cligalaxy-projectirida
      Python
      •
      Apache License 2.0
      •1•0•8•4•Updated Feb 8, 2023Feb 8, 2023

    • irida-plugin-sars-cov-2-illumina

      Public
      irida-plugin
      Java
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 11, 2022Oct 11, 2022

    • irida-plugin-sars-cov-2-nanopore

      Public
      The nanopore workflow plugin for sars-cov2
      covid-19sars-cov-2
      Java
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 11, 2022Oct 11, 2022

    • workbench

      Public
      🐳📊📚 Docker Images tracking the stable Galaxy releases.
      Shell
      •
      MIT License
      •137•0•0•1•Updated Oct 11, 2022Oct 11, 2022

    • irida

      Public
      Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology
      Java
      •
      Apache License 2.0
      •32•0•0•0•Updated May 20, 2022May 20, 2022

    • workbench-deploy

      Public
      IRIDA and Galaxy deployment manifest definitions and scripts
      HTML
      •
      Apache License 2.0
      •1•1•8•0•Updated Feb 16, 2022Feb 16, 2022

    • irida-plugin-fastp

      Public
      Java
      •0•0•0•0•Updated Dec 3, 2021Dec 3, 2021

    • irida-uploader

      Public
      Sequence file uploader for IRIDA
      Python
      •
      Apache License 2.0
      •13•0•0•0•Updated Dec 3, 2021Dec 3, 2021

    • combatsarscov2-docs

      Public
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Oct 25, 2021Oct 25, 2021

    • irida-pipeline-plugins

      Public
      IRIDA pipeline definitions
      Java
      •
      Apache License 2.0
      •0•0•1•0•Updated Sep 9, 2021Sep 9, 2021
    0