8000 combat-sars-cov-2 repositories · GitHub
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    • Workbench-cli is a command-line shell and scripting interface for Galaxy, Irida and other various popular bioinformatics platforms, envisioned to be a Swiss Army knife designed to make life easier for those who love hacking away at the command prompt.
      Python
      Apache License 2.0
      1084Updated Feb 8, 2023Feb 8, 2023
    • Java
      Apache License 2.0
      0000Updated Oct 11, 2022Oct 11, 2022
    • The nanopore workflow plugin for sars-cov2
      Java
      Apache License 2.0
      0000Updated Oct 11, 2022Oct 11, 2022
    • workbench

      Public
      🐳📊📚 Docker Images tracking the stable Galaxy releases.
      Shell
      MIT License
      137001Updated Oct 11, 2022Oct 11, 2022
    • irida

      Public
      Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology
      Java
      Apache License 2.0
      32000Updated May 20, 2022May 20, 2022
    • IRIDA and Galaxy deployment manifest definitions and scripts
      HTML
      Apache License 2.0
      1180Updated Feb 16, 2022Feb 16, 2022
    • Java
      0000Updated Dec 3, 2021Dec 3, 2021
    • Sequence file uploader for IRIDA
      Python
      Apache License 2.0
      13000Updated Dec 3, 2021Dec 3, 2021
    • Creative Commons Attribution 4.0 International
      0000Updated Oct 25, 2021Oct 25, 2021
    • IRIDA pipeline definitions
      Java
      Apache License 2.0
      0010Updated Sep 9, 2021Sep 9, 2021
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