8000 PennLINC repositories · GitHub

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187 repositories

aslprep
Public
Preprocessing of arterial spin labeling (ASL) data
asl cbf bids-apps
Python
•
Other
•15•48•43•9•Updated May 19, 2025May 19, 2025
luo_wm_dev
Public
HTML
•0•0•0•0•Updated May 17, 2025May 17, 2025
babs
Public
BIDS App Bootstrap (BABS)
Python
•
MIT License
•8•8•27•1•Updated May 16, 2025May 16, 2025
sypres-docs
Public
HTML
•
MIT License
•0•0•1•3•Updated May 12, 2025May 12, 2025
xcp_d
Public
Post-processing of fMRIPrep, NiBabies, and HCP outputs
Python
•
BSD 3-Clause "New" or "Revised" License
•28•91•44•14•Updated May 12, 2025May 12, 2025
qsirecon
Public
Reconstruction of preprocessed q-space images (dMRI)
mri bids dwi diffusion-mri bids-format dmri bidsapp bids-apps
Python
•
BSD 3-Clause "New" or "Revised" License
•11•9•68•6•Updated May 8, 2025May 8, 2025
simbids
Public
Simulate BIDS MRI data and BIDS Derivatives for CI testing
Python
•
Apache License 2.0
•0•0•0•1•Updated May 1, 2025May 1, 2025
qsiprep
Public
Preprocessing of diffusion MRI
pipelines distortion-correction bids motion-correction diffusion-mri denoising-images
Python
•
BSD 3-Clause "New" or "Revised" License
•58•154•116•8•Updated Apr 28, 2025Apr 28, 2025
clinical_dmri_benchmark
Public
Can we reliably get nice bundles from clinical quality dmri?
Jupyter Notebook
•
MIT License
•0•1•1•0•Updated Apr 28, 2025Apr 28, 2025
PennLINC.github.io
Public
Documentation for PennLINC
HTML
•
MIT License
•17•4•29•3•Updated Apr 22, 2025Apr 22, 2025
CuBIDS
Public
Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.
neuroscience neuroimaging neuroinformatics python-package data-curation neuroscience-methods neuroimaging-data-science data-organization
Python
•
MIT License
•12•25•44•8•Updated Apr 16, 2025Apr 16, 2025
babs-yamls-cubic
Public
Shell
•
MIT License
•0•0•0•0•Updated Apr 4, 2025Apr 4, 2025
grmpy_opendata
Public
Jupyter Notebook
•
MIT License
•0•0•0•0•Updated Apr 3, 2025Apr 3, 2025
cubic-environment-yamls
Public
MIT License
•0•0•1•0•Updated Mar 27, 2025Mar 27, 2025
pNet
Public
pNet is a Python package for computing personalized, sparse, non-negative large-scale functional networks from functional magnetic resonance imaging (fMRI) data, particularly resting state fMRI data.
Python
•1•0•0•0•Updated Mar 21, 2025Mar 21, 2025
ModelArray
Public
ModelArray: an R package for statistical analysis of fixel-wise data and beyond
r big-data statistical-analysis neuroimaging
R
•
Other
•3•5•17•2•Updated Mar 14, 2025Mar 14, 2025
macedo_tracometry
Public
Jupyter Notebook
•0•0•0•0•Updated Mar 4, 2025Mar 4, 2025
xcpd_build
Public
Builds a base docker image for xcp-d
Dockerfile
•2•2•4•0•Updated Jan 17, 2025Jan 17, 2025
qsirecon_build
Public
Docker build for QSIRecon
Dockerfile
•
Apache License 2.0
•0•0•0•0•Updated Jan 13, 2025Jan 13, 2025
thalamocortical_development
Public
https://pennlinc.github.io/thalamocortical_development/
R
•1•1•0•0•Updated Jan 8, 2025Jan 8, 2025
smripost-linc
Public
Aggregate interesting derivatives from sMRIPrep/Freesurfer derivatives
Python
•
BSD 3-Clause "New" or "Revised" License
•0•0•6•1•Updated Jan 7, 2025Jan 7, 2025
test_dashboard
Public
HTML
•0•0•0•0•Updated Dec 19, 2024Dec 19, 2024
aslprep_build
Public
Builds a base docker image for xcp-d
Dockerfile
•
BSD 3-Clause "New" or "Revised" License
•0•0•3•0•Updated Nov 25, 2024Nov 25, 2024
TheWay
Public
Boilerplate scripts for running workflows on Penn clusters
Shell
•
BSD 3-Clause "New" or "Revised" License
•11•5•2•12•Updated Nov 25, 2024Nov 25, 2024
.github
Public
0•0•0•0•Updated Nov 22, 2024Nov 22, 2024
ingress2qsirecon
Public
A tool for ingressing outputs from other processing pipelines (e.g., HCP, UKB) for use in QSIRecon.
dwi mri-reconstruction
Python
•
MIT License
•1•0•0•0•Updated Nov 18, 2024Nov 18, 2024
qsiprep_build
Public
Builds the dependencies for qsiprep
Dockerfile
•
Apache License 2.0
•3•2•1•1•Updated Nov 13, 2024Nov 13, 2024
GRMPY_clinical_data
Public
0•0•0•0•Updated Nov 5, 2024Nov 5, 2024
ingress2xcpd
Public
A tool for ingressing outputs from other processing pipelines (e.g., HCP, UKB) for use in XCP_D.
Python
•
MIT License
•1•0•0•0•Updated Oct 23, 2024Oct 23, 2024
open-physio-data
Public
Open fMRI datasets with concurrent physio data. Focused on physio measures that correlate with autonomic state.
MIT License
•0•0•3•0•Updated Oct 15, 2024Oct 15, 2024

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