8000 MICA-MNI repositories · GitHub
[go: up one dir, main page]
More Web Proxy on the site http://driver.im/
Skip to content

@MICA-MNI MICA-MNI

Change the repository type filter

All

    Repositories list

    28 repositories

    • ENIGMA

      Public
      The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🤠
      visualizationopen-sourceawesomemultisiteanalysismrienigmaneuroimagingconnectomicsworkflows
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •37•149•9•1•Updated May 5, 2025May 5, 2025

    • micaflow

      Public
      The easy way to process MRI data
      pythonmriregistrationneuroimagingniftimri-brain
      Python
      •0•0•0•0•Updated May 1, 2025May 1, 2025

    • LAMAReg

      Public
      Label based Modality Agnostic Registration (LaMAR) is a MRI resgistration technique combines deep learning-based segmentation and numerical solutions to generate precise non linear warpfields
      Python
      •
      Other
      •0•2•1•0•Updated Apr 22, 2025Apr 22, 2025

    • z-brains

      Public
      z-brains: open software for brain lesion lateralization and localization
      mrineuroimagingepilepsylesionlateralizationze-brain
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•10•6•0•Updated Apr 17, 2025Apr 17, 2025

    • LAMAR-Models

      Public
      Models for LAMAR's synthseg backend
      0•0•0•0•Updated Apr 10, 2025Apr 10, 2025

    • 2025_in-vivo_tauPET-mk6240_TLE

      Public
      This repository provides code for analyzing in-vivo tau aggregation in temporal lobe epilepsy (TLE) using 18F-MK6240 PET. It includes preprocessing, statistical analysis, and visualization scripts to assess tau deposition, connectivity patterns, and cognitive associations in TLE patients and controls.
      Jupyter Notebook
      •
      MIT License
      •0•3•1•0•Updated Apr 4, 2025Apr 4, 2025

    • micapipe

      Public
      micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below
      awesomemrineuroimagingimageprocessingbidsmicrostructurediffusion-mriconnectomeresting-statemultimodal
      Shell
      •
      GNU General Public License v3.0
      •34•101•28•6•Updated Apr 2, 2025Apr 2, 2025

    • MICA-7t

      Public
      scripts for 7t sorting and organizing
      Shell
      •
      GNU General Public License v3.0
      •0•8•0•0•Updated Mar 31, 2025Mar 31, 2025

    • MRI-Histology_framework_for_SWM_architecture

      Public
      This repository contains analysis notebooks for studying SWM microstructure using post-mortem and in-vivo datasets. It includes preprocessing, statistical analysis, and visualization scripts to assess intensity profiles from all datasets, gradients from qMRI, and their correlations with cortical geometry, functional and structural connectivity.
      Jupyter Notebook
      •
      MIT License
      •0•2•0•0•Updated Mar 26, 2025Mar 26, 2025

    • MICA-MNI.github.io

      Public
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •0•1•0•0•Updated Mar 4, 2025Mar 4, 2025

    • micaopen

      Public
      Open Scripts and pipelines from the Multimodal Imaging and Connectome Analysis Lab at the Montreal Neurological Institute
      machine-learningneuroscienceneuroimagingnetworksgradientsconnectomicshistologymultimodalmulti-scale
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •40•75•1•2•Updated Feb 8, 2025Feb 8, 2025

    • GeneticRisk_TLE

      Public
      Structural correlates of epilepsy genetic risk
      Python
      •1•0•0•0•Updated Feb 6, 2025Feb 6, 2025

    • BrainSpace

      Public
      BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics datasets | available in both Python and Matlab |
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •76•213•7•3•Updated Feb 6, 2025Feb 6, 2025

    • Wang_MultimodalGradient

      Public
      MATLAB
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Jan 31, 2025Jan 31, 2025

    • hippomaps

      Public
      Toolbox and data repository for hippocampal surface data
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •4•3•0•0•Updated Dec 4, 2024Dec 4, 2024

    • mk6240_pet-tau_Healthy

      Public
      Data collection and organization of the PET-TAU tracer mk6240 in Healthy population from the Montreal Neurological Institute (The Neuro) MICA lab.
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 21, 2024Nov 21, 2024

    • BrainStat

      Public
      A statistics and context decoding toolbox for neuroimaging.
      pythonstatisticsmatlabneuroimaging
      Jupyter Notebook
      •
      Other
      •23•101•11•0•Updated Sep 27, 2024Sep 27, 2024

    • AllenMouse

      Public
      Expression of genes in hippocampis
      Jupyter Notebook
      •0•0•0•0•Updated May 7, 2024May 7, 2024

    • Hippo_Spin_Testing

      Public
      Spin testing implemented in the hippocampus using HippUnfold
      Jupyter Notebook
      •2•0•0•0•Updated Nov 6, 2023Nov 6, 2023

    • MICs_tasks

      Public
      Workflow for tasks, from raw files to bids tsv
      R
      •0•0•0•0•Updated Jun 22, 2023Jun 22, 2023

    • micapipe-supplementary

      Public
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Jun 15, 2023Jun 15, 2023

    • bibliography

      Public
      MICA Bibliography
      TeX
      •
      The Unlicense
      •0•0•0•0•Updated Dec 17, 2021Dec 17, 2021

    • 7T-battery

      Public
      7T ‘precision imaging' plan
      Python
      •0•0•0•0•Updated Nov 15, 2021Nov 15, 2021

    • NeuroimagingDataScience

      Public
      Neuroimaging Data Science Class NEUR 608
      HTML
      •1•2•0•0•Updated Aug 17, 2020Aug 17, 2020

    • surfstat

      Public
      HTML
      •1•0•0•0•Updated Apr 10, 2019Apr 10, 2019

    • autism-workshop-2019.github.io

      Public
      CSS
      •0•0•0•0•Updated Dec 14, 2018Dec 14, 2018

    • CBIG

      Public
      MATLAB
      •
      MIT License
      •396•0•0•0•Updated Sep 12, 2018Sep 12, 2018

    • Presentations

      Public
      1•1•0•0•Updated Jun 12, 2018Jun 12, 2018
    0