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    25 repositories

    • PHENOMICL

      Public
      Apply machine or deep learning to high-resolution, histological slide images
      Python
      •
      Other
      •1•2•0•0•Updated Apr 25, 2025Apr 25, 2025

    • LoFTK

      Public
      The Loss-of-Function ToolKit (LoFTK) allows efficient and automated prediction of LoF variants from both genotyped and sequenced genomes, identifying genes that are inactive in one or two copies, and providing summary statistics for downstream analyses.
      loss-of-functionlofs
      Perl
      •
      Creative Commons Attribution Share Alike 4.0 International
      •3•9•1•1•Updated Mar 18, 2025Mar 18, 2025

    • PHENOMICL_downstream

      Public
      HTML
      •0•0•0•0•Updated Mar 7, 2025Mar 7, 2025

    • gwas2cojo

      Public
      gwas2cojo
      Python
      •0•0•0•0•Updated Mar 7, 2025Mar 7, 2025

    • RePlaq

      Public
      Replicating the expression quantitative trait loci of carotid Plaques in the Athero-Express Biobank Study
      HTML
      •
      MIT License
      •0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

    • AE_20211201_YAW_SWVANDERLAAN_HDAC9

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Aug 22, 2024Aug 22, 2024

    • QTLToolKit2

      Public archive
      A workflow based on QTLtools and tensorQTL to run cis- and trans-QTL analyses (SLURM based).
      qtlqtl-analysis
      Shell
      •6•0•0•0•Updated Apr 20, 2024Apr 20, 2024

    • AAO_IschemicStroke

      Public
      Additional figures and analyses for the age at onset of ischemic stroke meta-GWAS.
      C++
      •
      Other
      •0•0•0•0•Updated Dec 1, 2023Dec 1, 2023

    • EntropyMasker

      Public
      A fully automated approach for separating foreground (tissue) and background in bright-field microscopic whole-slide images of (immuno)histologically stained samples.
      histologywhole-slide-imagingimage-masking
      Jupyter Notebook
      •
      Other
      •1•2•2•2•Updated Oct 4, 2023Oct 4, 2023

    • ExpressScan_Glycophorin

      Public
      Scripts used for the "Glycophorin C in carotid atherosclerotic plaque reflects intraplaque hemorrhage and pre-procedural neurological symptoms" paper.
      cellprofilerslidetoolkitdigital-pathologywhole-slide-imagingplaqueatherosclerosisplaque-characteristicexpressscan
      HTML
      •
      Other
      •0•1•0•0•Updated Sep 12, 2023Sep 12, 2023

    • CHARGE_1000G_CAC

      Public
      CHARGE Consortium: collaboration for mapping targets from 1000G GWAS on coronary artery calcification (CAC) with Maryam Kavousi, Maxime Bos, Clint L. Miller, and Pat Peyser.
      gwasrnaseqscrna-seqgenome-wide-association-studiescoronary-artery-calcificationregional-association-plots
      HTML
      •
      MIT License
      •0•4•0•0•Updated Aug 29, 2023Aug 29, 2023

    • EndoMT_in_AE

      Public
      HTML
      •
      Other
      •0•1•0•0•Updated May 26, 2023May 26, 2023

    • Inherited-cardiomyopathies

      Public
      This project aimed to to assess the prevalence of pathogenic variants associated with ARVC, DCM or HCM in the general UK population using UK Biobank data.
      R
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•3•0•0•Updated Feb 3, 2023Feb 3, 2023

    • AE_20190912_010_MDICHGANS_SWVDLAAN_IL6_MCP1

      Public
      Project with the group of Martin Dichgans regarding MCP1 in plaques.
      HTML
      •
      MIT License
      •0•0•0•0•Updated Nov 18, 2022Nov 18, 2022

    • AE_171212_9p21_IRAK4

      Public
      HTML
      •
      Other
      •0•0•0•0•Updated Nov 18, 2022Nov 18, 2022

    • Sex_differences_scRNA

      Public
      Sex differences in atherosclerotic lesions are driven by both cell specific RNA expression and cellular composition
      0•1•0•0•Updated Oct 13, 2022Oct 13, 2022

    • AE_OLINK_LPL_and_MACE

      Public
      Accompanying 'Plasma Lipoprotein Lipase is associated with Risk for Future Major Adverse Cardiovascular Events in Patients Following Carotid Endarterectomy'
      R
      •
      Other
      •0•0•0•0•Updated Sep 16, 2022Sep 16, 2022

    • kai6662.github.io

      Public template
      (Pre-release) An easy-to-use, flexible website template for labs, with automatic citations, GitHub tag imports, pre-built components, and more
      SCSS
      •
      BSD 3-Clause "New" or "Revised" License
      •372•0•0•0•Updated Sep 13, 2022Sep 13, 2022

    • MicroanatomyHumanPlaque_scRNAseq

      Public
      Scripts accompanying "Microanatomy of the human atherosclerotic plaque by single-cell transcriptomics"
      R
      •
      MIT License
      •6•12•1•0•Updated Apr 20, 2022Apr 20, 2022

    • gwas2single

      Public
      R
      •
      Other
      •1•1•0•0•Updated Apr 20, 2022Apr 20, 2022

    • idiverge

      Public
      HTML
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Mar 9, 2022Mar 9, 2022

    • .github

      Public
      0•0•0•0•Updated Mar 8, 2022Mar 8, 2022

    • UKBioPick

      Public
      The UKBioPick allows extraction of interested UK Biobank phenotypes.
      Shell
      •
      MIT License
      •0•3•2•0•Updated Feb 16, 2022Feb 16, 2022

    • BlandAltman

      Public
      Example code of the Bland-Altman test.
      HTML
      •
      MIT License
      •1•0•0•0•Updated Oct 13, 2021Oct 13, 2021

    • PlaqueCluster

      Public
      R
      •
      Creative Commons Zero v1.0 Universal
      •2•1•0•0•Updated Jun 11, 2021Jun 11, 2021
    0